Table 2.

GO Biological Processes Enriched in the Internal Nodes Returned by Each Algorithm

Algorithm	Parameters	Enriched function	Score
Linker	k = 10	Single recognition particle (SNP)-dependent cotranslational protein targeting to membrane, translocation	0.972156
		Cell-shape checkpoint	0.9186824
		Activation of mitogen-activated protein kinase kinase (MAPKK) activity	0.6717416
		Regulation of cytokinesis	0.5640634
	k = 20	SRP-dependent cotranslational protein-targeting to membrane, translocation	0.9863416
		Cell-shape checkpoint	0.8668016
		Regulation of cytokinesis	0.5174146
		Activation of MAPKK activity	0.507788
	k = 30	Cell-shape checkpoint	0.7922704
		Regulation of exit from mitosis	0.5509068
KSP	k = 10	Cell-shape checkpoint	0.9843462
	k = 20	Regulation of exit from mitosis	0.7266564
		SRP-dependent cotranslational protein targeting to membrane, translocation	0.6884412
		Regulation of spindle pole body separation	0.5822936
		Regulation of fungal-type Cell wall organization	0.509839
	k = 30	SRP-dependent cotranslational protein-targeting to membrane, translocation	0.9721356
		Regulation of exit from mitosis	0.7075808
		Negative regulation of autophagy	0.5566982
		Positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	0.5038384
MsgSteiner	λ = 0.1875, d = 4	Regulation of spindle pole body separation	0.8683294
	λ = 0.25, d = 3	Cell-shape checkpoint	0.8484602
	λ = 0.25, d = 5	Regulation of sequence-specific DNA-binding transcription factor activity	0.8618764
	λ = 0.25, d = 5	Regulation of sequence-specific DNA-binding transcription factor activity	0.8493982

The table reports algorithm and parameter combinations for which at least one function was enriched (i.e., the MGSA posterior probability was at least 0.5).