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. 2013 Apr 27;13:92. doi: 10.1186/1471-2180-13-92

Table 1.

Bacterial strains and plasmids

Strains, plasmids or primers Genotype or description Reference or source
E. coli
 
 
  DH5αλ pir
φ80dlacZΔM15 Δ(lacZYA-argF)U169 recA1 endA1 gyrA96 thi-1 hsdR17 supE44 relA1 deoR λpir
[19]
P. fluorescens
 
 
  Pf0-1
Wild type, Ampr
[20]
  PfΔdap
Pf0-1 ΔdapB
This Study
  Pf0-1::pKNOCK Fr2
Pf0-1 with partial deletion of Fr2
This Study
  Pf0-1::pKNOCK Fr4
Pf0-1 with partial deletion of Fr4
This Study
  Pf0-1::pKNOCK Fr9
Pf0-1 with partial deletion of Fr9
This Study
  Pf0-1::pKNOCK Fr10
Pf0-1 with partial deletion of Fr10
This Study
  Pf0-1::pKNOCK Fr2pJB
Pf0-1 with partial deletion of Fr2 carrying pJB866
This Study
  Pf0-1::pKNOCK Fr2pJB Fr2
Pf0-1 with partial deletion of Fr2 Complemented by pJB866::Fr2
This Study
  Pf0-1::pKNOCK Fr10pJB
Pf0-1 with partial deletion of Fr10 carrying pJB866
This Study
  Pf0-1::pKNOCK Fr10pJB Fr10
Pf0-1 with partial deletion of Fr10 Complemented by pJB866::Fr10
This Study
Plasmids
 
 
  pGEM-T Easy
Apr; cloning vector for PCR products
Promega
  pIVETdap
dapB’ cloned in SpeI site of pUIC3
[11]
  pJB866
Broad-host-range vector, Tcr
[21]
  pRK2013
Helper plasmid, IncP Tra+ Mob+ ColE1, Kmr
[21]
  pKNOCK-Km
pBSL63 derivative carrying RP4 oriT and R6K γ-ori, Kmr
[22]
  pSR47s Kmr; sacB-containing suicide vector (requiring R6K replication origin) [23]