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. 2013 May 7;8(5):e63496. doi: 10.1371/journal.pone.0063496

Table 3. Genetic analysis per genomic region.

Region Codon Position Sites Segregating sites ETA* Pi** K*** NS sites S Sites TajimaD
Capsid Protein C 13–342 330 26 26 0.009 2.806 8 18 −1.952
Polyprotein Propeptide 355–612 258 18 18 0.005 1.166 3 15 −2.472
Envelope Glycoprotein M 616–840 225 19 19 0.008 1.829 0 19 −2.052
Glycoprotein E: central and dimerization domains 841–1722 882 88 88 0.010 8.513 15 73 −2.257
Glycoprotein E: immunoglobulin-like domain 1726–2013 288 31 31 0.011 3.234 7 24 −2.033
NS1 2323–3387 1065 87 88 0.008 8.011 17 71 −2.344
NS2A 3406–4029 624 66 66 0.010 6.054 11 55 −2.311
NS2B 4039–4419 381 33 34 0.007 2.765 5 29 −2.382
NS3 Serine Protease 4459–4923 465 30 30 0.006 2.749 3 27 −2.211
DEXDc domain 4987–5811 825 59 60 0.008 2.717 8 52 −2.241
NS4A 6286–6720 435 40 40 0.010 4.146 6 34 −2.078
NS4B 6727–7455 729 66 66 0.009 6.496 8 58 −2.210
AdoMet-MTase 7633–8133 501 34 34 0.008 3.972 1 33 −1.864
RNA-directed RNA polymerase 8218–10158 1941 161 162 0.008 15.130 24 138 −2.340
Full coding region 1–10170 10170 888 893 0.008 83.398 132 761 −2.373
*

Total number of mutations.

**

Nucleotide diversity.

***

Average number of nucleotide differences.