Table 3. Genetic analysis per genomic region.

Region	Codon Position	Sites	Segregating sites	ETA*	Pi**	K***	NS sites	S Sites	TajimaD
Capsid Protein C	13–342	330	26	26	0.009	2.806	8	18	−1.952
Polyprotein Propeptide	355–612	258	18	18	0.005	1.166	3	15	−2.472
Envelope Glycoprotein M	616–840	225	19	19	0.008	1.829	0	19	−2.052
Glycoprotein E: central and dimerization domains	841–1722	882	88	88	0.010	8.513	15	73	−2.257
Glycoprotein E: immunoglobulin-like domain	1726–2013	288	31	31	0.011	3.234	7	24	−2.033
NS1	2323–3387	1065	87	88	0.008	8.011	17	71	−2.344
NS2A	3406–4029	624	66	66	0.010	6.054	11	55	−2.311
NS2B	4039–4419	381	33	34	0.007	2.765	5	29	−2.382
NS3 Serine Protease	4459–4923	465	30	30	0.006	2.749	3	27	−2.211
DEXDc domain	4987–5811	825	59	60	0.008	2.717	8	52	−2.241
NS4A	6286–6720	435	40	40	0.010	4.146	6	34	−2.078
NS4B	6727–7455	729	66	66	0.009	6.496	8	58	−2.210
AdoMet-MTase	7633–8133	501	34	34	0.008	3.972	1	33	−1.864
RNA-directed RNA polymerase	8218–10158	1941	161	162	0.008	15.130	24	138	−2.340
Full coding region	1–10170	10170	888	893	0.008	83.398	132	761	−2.373

^*Total number of mutations.

^**Nucleotide diversity.

^***Average number of nucleotide differences.