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. 2013 May 7;8(5):e63865. doi: 10.1371/journal.pone.0063865

Table 2. Comparison of different methods for determining protein concentration.

Instrument Solution Assay Method Concentration
Plate reader BCA reagents Abs at 562 nm 103.9 ± 13.9
Spectrophotometer H2O Abs at 280 nm 107.0 ± 6.9
Spectrophotometer GnHCl Abs at 280 nm 94.2 ± 5.7
NanoDrop* H2O Abs at 280 nm 88.0 ± 8.6
NanoDrop* GnHCl Abs at 280 nm 98.1 ± 11.6

Concentration determination was performed using five dilutions (1∶1, 1∶2, 1∶5, 1∶10 & 1∶20) of a standard peptide solution (100 µM). The lowest dilution produced unreliable readings for all methods other than the BCA assay, and was not used for calculating the concentration or the standard deviation in those methods. Only the 1∶1 and 1∶2 dilutions produced reliable readings when using the NanoDrop; for this method, all other readings were omitted when calculating the concentration and standard deviation. * dilutions below 20 µM were unreliable and excluded.