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. 2013 May 7;8(5):e62681. doi: 10.1371/journal.pone.0062681

Table 5. Summary of female-specific novel miRNAs.

Name Sequence (5-3) LP MFE miRNA location miRNA reads miR*reads
Pto-F18 TTGGTTAAACTCCCATCAGGA 133 −65.6 chr1∶7117690–7117710 126 NO
Pto-F19 CTCAGATTAGCCAGGTGCCT 117 −44.3 chr1∶10983482–10983501 105 NO
Pto-F20 TTATTAAACCCGGACCGGCCT 122 −54.62 chr1∶18312617–18312637 126 NO
Pto-F21 TACCCGGTTACTGTGCATGTGC 76 −33.3 chr1∶38996098–38996119 126 NO
Pto-F22 TATCCTTGGATCTGACGACCA 220 −123.4 chr1∶39819960–39819980 294 NO
Pto-F23 TTTTCGATCCAAGCTTCGGGT 80 −27.1 chr1∶42987729–42987749 105 NO
Pto-F24 TTACTTCCTTTTGTCCCTCTC 303 −177.4 chr2∶1282957–1282977 357 NO
Pto-F25 TATAGATTGCAGAGGGAACC 203 −71.04 chr2∶12233873–12233892 126 NO
Pto-F26 TTATTAAACCCGGACCGGCCT 78 −42.8 chr2∶19952785–19952805 126 NO
Pto-F27 TCCGAGCTCTAATTATGTGGG 182 −92 chr2∶21648214–21648234 798 NO
Pto-F28 TTGGGCTGGCAGTTGTGATGAC 161 −45.87 chr3∶19076220–19076241 231 NO
Pto-F29 TTCCGGTTTTTGGGACTCCGAT 103 −35.1 chr4∶20319258–20319279 105 NO
Pto-F30 TTCTTTCCTATCAAACTTCAAC 191 −92.4 chr4∶22210258–22210279 105 NO
Pto-F31 TGAAGATAAGAGCTTGTTTGG 169 −75.86 chr5∶6548077–6548097 651 NO
Pto-F32 TTTGCACGTAGAATTCAGGATT 139 −38 chr5∶18398103–18398124 588 NO
Pto-F33 ATGGATTGATGAAGATGAGGA 92 −26.3 chr5∶21111319–21111339 105 NO
Pto-F34 TTATTTCCTCAAACTTTCCTC 256 −159.8 chr5∶24262419–24262439 273 NO
Pto-F35 TAGAACCTGACCAGTTGAGCT 116 −30 chr6∶2313141–2313161 105 NO
Pto-F36 TGGCCCATGATCTTCATTGTG 115 −78.02 chr6∶6767559–6767579 357 YES
Pto-F37 TTTTTGTTGTTTAAGAACCCT 301 −128.6 chr6∶21307737–21307757 315 NO
Pto-F38 TTGGGCTGGCAGTTGTGATGAC 161 −46.2 chr7∶301518–301539 231 NO
Pto-F39 TGTGGGACTCGAATTAGTGAT 96 −26.43 chr7∶13307862–13307882 147 NO
Pto-F40a GAGGAGGGAGAGAGATCTGT 136 −38.3 chr8∶5498368–5498387 126 NO
Pto-F40b GAGGAGGGAGAGAGATCTGT 114 −34.3 chr8∶5522852–5522871 126 NO
Pto-F41 ATCCAACGGTTAGATCTCCCT 296 −162.7 chr8∶8443078–8443098 105 NO
Pto-F42 CTTGAAACAATGTTTGGTGCAG 121 −31.9 chr8∶10699331–10699352 105 NO
Pto-F43 TAGAGTATAAGAGGATCGACT 124 −32.4 chr8∶15869891–15869911 147 NO
Pto-F44 ACTTTGACCTGAACTTGCCC 79 −40 chr9∶8255922–8255941 105 NO
Pto-F45 TGTCCTGACTCGAACTCGAGA 82 −21.2 chr10∶7102937–7102957 189 NO
Pto-F46 TGAAGATAAGAGCTTGTTTGG 169 −77.06 chr10∶7227906–7227926 651 NO
Pto-F47 GGGACTGCTGTAGATGCTTGG 90 −34.7 chr10∶13462743–13462763 105 NO
Pto-F48 TTGATGACTGATCTTGAGCAT 99 −62.8 chr10∶16376128–16376148 189 YES
Pto-F49 TTGTAAGAGCCTGAGACAGCC 143 −51.8 chr10∶18334850–18334870 714 NO
Pto-F50 TTTAATTTCCTCCAATATCTCA 169 −45.91 chr10∶20020296–20020317 399 NO
Pto-F51 TTGGAATCCTCTCTGATAATGC 105 −30.5 chr10∶20322598–20322619 105 NO
Pto-F52 TTTAGGACCCGTGGGATTAGTC 102 −27 chr11∶8039096–8039117 189 NO
Pto-F53 TCAATGGGTAAAAATTCTGACC 96 −24.4 chr12∶3834076–3834097 126 NO
Pto-F54 TTGGAGCTCGAGACTTGGCAC 90 −25.74 chr13∶1347925–1347945 105 NO
Pto-F55 ATCACTGTGTCTATTAGGATGG 82 −28.1 chr13∶6333415–6333436 105 NO
Pto-F56 TGCTAGGACCAAGTTTTCTGG 103 −53.34 chr13∶9970875–9970895 609 YES
Pto-F57 TTCAGGACCTGTAGAATTAGTC 92 −24.2 chr13∶12124499–12124520 105 NO
Pto-F58a TGAATGGCTGTTGAACTTGGC 156 −49.5 chr14∶293794–293814 168 NO
Pto-F58b TGAATGGCTGTTGAACTTGGC 158 −45.51 chr14∶726835–726855 168 NO
Pto-F58c TGAATGGCTGTTGAACTTGGC 158 −52.6 chr14∶1080042–1080062 168 NO
Pto-F59 TGATGGGTCTCATTTAGTAGA 215 −86.36 chr14∶5877228–5877248 441 NO
Pto-F60 AACCGAACCGAACTGAACCGA 98 −33.4 chr14∶16267732–16267752 105 NO
Pto-F61 TTATAGTTTTGAAATCCGGCC 95 −47.2 chr15∶5715046–5715066 147 NO
Pto-F62 AACCCAAGAACTCAACTCTGT 171 −68.37 chr15∶6997081–6997101 126 NO
Pto-F63 GTACGATCCTATAGAACAGAT 116 −34.5 chr15∶15015652–15015672 189 YES
Pto-F64 CAACACCAGACCCAAGAGCTT 117 −44.51 chr16∶5544896–5544916 210 NO
Pto-F65 TTAGGGTTTAGGGTTTAGAA 157 −41.6 chr17∶210550–210569 126 NO
Pto-F66 TCGAGATTGTACTGTTCATA 77 −23.6 chr17∶4120360–4120379 105 NO
Pto-F67 TGGCAAATGATCTGCATCTGC 90 −24.52 chr17∶13666346–13666366 105 NO
Pto-F68 GTGGGTGGGTCTGGGTGGCA 118 −47.7 chr18∶10507789–10507808 147 NO
Pto-F69 TTTGCTCTTCGTTTTCTCATG 170 −77.8 chr18∶14336738–14336758 294 NO
Pto-F70 TTTTATTCCTGACTCTGGCATC 166 −43.31 chr19∶907650–907671 126 NO
Pto-F71 TTGGGAATTATTACAATGGCA 106 −31.8 chr19∶1460855–1460875 147 NO
Pto-F72 TTATTAAACCCGGACCGGCCT 87 −39.6 chr19∶2013039–2013059 126 NO
Pto-F73 TGTTTTCCGGAAAGTAGTTTC 99 −27.1 chr19∶8890465–8890485 378 NO
Pto-F74 TAGGGCAGAGAATTGAATGACT 119 −45.4 chr19∶10646670–10646691 252 NO
Pto-F75 TCGAGATTTCTTTGTTGGAGCT 125 −42.72 scaffold_1233∶2309–2330 126 NO
Pto-F76 TCGGCGTTGATGTAGAATGGC 153 −53.1 scaffold_401∶10122–10142 126 NO
Pto-F77 TTTTGAGACAATGCTGAAAAT 99 −28.4 scaffold_65∶42511–42531 1953 NO
Pto-F78 ACATGAAACGGCGTCGTTTTG 91 −26 scaffold_76∶39681–39701 126 NO