Table 1.
Short hairpin oligonucleotide sequences used for Rab5, Rab7, Rab9, and Rab11 depletion
| Protein | Sequence no. | Sequence order | Sequence |
|---|---|---|---|
| Rab5 | 1 | Top | 5′ CACCGCAGCCATAGTTGTATATGATGAGAATCATATACAACTATGGCTGC 3′ |
| Bottom | 5′ AAAAGCAGCCATAGTTGTATATGATTCTCATCATATACAACTATGGCTGC 3′ | ||
| 2 | Top | 5′ CACCGGAATCAGTGTTGTAGTAACTGAGAAGTTACTACAACACTGATTCC 3′ | |
| Bottom | 5′ AAAAGGAATCAGTGTTGTAGTAACTTCTCAGTTACTACAACACTGATTCC 3′ | ||
| Rab7 | 1 | Top | 5′ CACCGGAAGACATCACTCATGAACCGAGAGGTTCATGAGTGATGTCTTCC 3′ |
| Bottom | 5′ AAAAGGAAGACATCACTCATGAACCTCTCGGTTCATGAGTGATGTCTTCC 3′ | ||
| 2 | Top | 5′ CACCGCTAGTCACAATGCAGATATGGAGACATATCTGCATTGTGACTAGC 3′ | |
| Bottom | 5′ AAAAGCTAGTCACAATGCAGATATGTCTCCATATCTGCATTGTGACTAGC 3′ | ||
| Rab9 | 1 | Top | 5′ CACCGGTGGAGTTGGGAAGAGTTCAGAGATGAACTCTTCCCAACTCCACC 3′ |
| Bottom | 5′ AAAAGGTGGAGTTGGGAAGAGTTCATCTCTGAACTCTTCCCAACTCCACC 3′ | ||
| 2 | Top | 5′ CACCGGTAACAAGATTGACATAAGCGAGAGCTTATGTCAATCTTGTTACC 3′ | |
| Bottom | 5′ AAAAGGTAACAAGATTGACATAAGCTCTCGCTTATGTCAATCTTGTTACC 3′ | ||
| Rab11 | 1 | Top | 5′ CACCGGAGATTCTGGTGTTGGAAAGGAGACTTTCCAACACCAGAATCTCC 3′ |
| Bottom | 5′ AAAAGGAGATTCTGGTGTTGGAAAGTCTCCTTTCCAACACCAGAATCTCC 3′ | ||
| 2 | Top | 5′ CACCGCAACAATGTGGTTCCTATTCGAGAGAATAGGAACCACATTGTTGC 3′ | |
| Bottom | 5′ AAAAGCAACAATGTGGTTCCTATTCTCTCGAATAGGAACCACATTGTTGC 3′ |