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. 2013 Jun;87(11):6415–6427. doi: 10.1128/JVI.00393-13

Table 1.

Short hairpin oligonucleotide sequences used for Rab5, Rab7, Rab9, and Rab11 depletion

Protein Sequence no. Sequence order Sequence
Rab5 1 Top 5′ CACCGCAGCCATAGTTGTATATGATGAGAATCATATACAACTATGGCTGC 3′
Bottom 5′ AAAAGCAGCCATAGTTGTATATGATTCTCATCATATACAACTATGGCTGC 3′
2 Top 5′ CACCGGAATCAGTGTTGTAGTAACTGAGAAGTTACTACAACACTGATTCC 3′
Bottom 5′ AAAAGGAATCAGTGTTGTAGTAACTTCTCAGTTACTACAACACTGATTCC 3′
Rab7 1 Top 5′ CACCGGAAGACATCACTCATGAACCGAGAGGTTCATGAGTGATGTCTTCC 3′
Bottom 5′ AAAAGGAAGACATCACTCATGAACCTCTCGGTTCATGAGTGATGTCTTCC 3′
2 Top 5′ CACCGCTAGTCACAATGCAGATATGGAGACATATCTGCATTGTGACTAGC 3′
Bottom 5′ AAAAGCTAGTCACAATGCAGATATGTCTCCATATCTGCATTGTGACTAGC 3′
Rab9 1 Top 5′ CACCGGTGGAGTTGGGAAGAGTTCAGAGATGAACTCTTCCCAACTCCACC 3′
Bottom 5′ AAAAGGTGGAGTTGGGAAGAGTTCATCTCTGAACTCTTCCCAACTCCACC 3′
2 Top 5′ CACCGGTAACAAGATTGACATAAGCGAGAGCTTATGTCAATCTTGTTACC 3′
Bottom 5′ AAAAGGTAACAAGATTGACATAAGCTCTCGCTTATGTCAATCTTGTTACC 3′
Rab11 1 Top 5′ CACCGGAGATTCTGGTGTTGGAAAGGAGACTTTCCAACACCAGAATCTCC 3′
Bottom 5′ AAAAGGAGATTCTGGTGTTGGAAAGTCTCCTTTCCAACACCAGAATCTCC 3′
2 Top 5′ CACCGCAACAATGTGGTTCCTATTCGAGAGAATAGGAACCACATTGTTGC 3′
Bottom 5′ AAAAGCAACAATGTGGTTCCTATTCTCTCGAATAGGAACCACATTGTTGC 3′