Table 2.
Pairwise identities of replicase domains and complete ORFs of CavV, NDiV, HanaV, NséV, MénoV, and MoumoV
| Gene | Virus | Size [nt (aa)] |
||||
|---|---|---|---|---|---|---|
| NDiV | HanaV | MénoV | NséV | MoumoV | ||
| 3CLpro | CavV | 90.5 (96.4) | 83.2 (90.5) | 67.0 (72.7) | 72.0 (79.3) | |
| NDiV | 83.0 (89.5) | 66.0 (72.4) | 72.5 (78.6) | |||
| HanaV | 69.8 (71.4) | 74.3 (79.3) | ||||
| MénoV | 68.3 (72.4) | |||||
| RdRp | CavV | 92.9 (98.5) | 83.4 (86.8) | 72.6 (76.6) | 76.0 (80.7) | 78.1 (83.6) |
| NDiV | 82.7 (86.6) | 72.3 (76.4) | 75.3 (80.7) | 77.6 (83.6) | ||
| HanaV | 71.1 (72.6) | 75.4 (79.4) | 76.3 (81.0) | |||
| MénoV | 70.8 (75.1) | 73.4 (78.3) | ||||
| NséV | 80.5 (87.3) | |||||
| Z | CavV | 94.8 (95.5) | 87.3 (86.5) | 77.0 (77.8) | 81.3 (82.0) | 76.4 (82.0) |
| NDiV | 89.1 (88.8) | 76.7 (77.8) | 80.9 (80.9) | 77.9 (83.1) | ||
| HanaV | 75.2 (74.4) | 79.4 (79.8) | 78.3 (80.9) | |||
| MénoV | 76.3 (76.7) | 76.3 (74.4) | ||||
| NséV | 80.1 (82.0) | |||||
| Hel | CavV | 92.2 (98.8) | 84.9 (90.4) | 78.1 (84.9) | 74.8 (81.4) | 75.2 (82.0) |
| NDiV | 86.2 (90.7) | 77.7 (84.9) | 74.8 (82.6) | 76.2 (82.3) | ||
| HanaV | 74.9 (79.9) | 74.6 (79.9) | 75.8 (80.8) | |||
| MénoV | 73.4 (81.7) | 75.0 (81.7) | ||||
| NséV | 79.6 (87.2) | |||||
| ExoN | CavV | 92.3 (94.2) | 84.3 (86.0) | 67.4 (64.3) | 73.4 (70.2) | 72.4 (67.4) |
| NDiV | 85.3 (86.8) | 68.1 (65.1) | 74.2 (69.4) | 73.8 (67.4) | ||
| HanaV | 68.0 (64.7) | 74.2 (70.9) | 74.2 (66.7) | |||
| MénoV | 69.6 (67.1) | 70.0 (65.5) | ||||
| NséV | 76.1 (70.9) | |||||
| NMT | CavV | 92.0 (94.0) | 87.0 (87.6) | 69.6 (67.7) | 69.4 (67.8) | 69.2 (68.4) |
| NDiV | 85.8 (89.3) | 70.9 (68.5) | 69.5 (69.1) | 69.3 (70.5) | ||
| HanaV | 71.9 (69.4) | 69.8 (67.4) | 70.0 (70.5) | |||
| MénoV | 67.7 (61.2) | 68.2 (63.4) | ||||
| NséV | 72.9 (70.8) | |||||
| OMT | CavV | 91.4 (94.6) | 80.4 (76.9) | 69.6 (66.1) | 75.1 (69.0) | 73.8 (70.7) |
| NDiV | 80.2 (76.4) | 70.4 (67.8) | 75.5 (70.7) | 74.5 (70.7) | ||
| HanaV | 67.2 (63.8) | 70.5 (65.3) | 70.1 (63.2) | |||
| MénoV | 70.5 (65.8) | 68.2 (64.2) | ||||
| NséV | 75.9 (73.6) | |||||
| ORF1a | CavV | 88.4 (90.0) | 79.5 (80.4) | 58.5 (49.1) | 64.3 (59.0) | |
| NDiV | 80.0 (81.6) | 58.5 (48.7) | 64.2 (59.1) | |||
| HanaV | 58.8 (49.1) | 64.8 (59.0) | ||||
| MénoV | 59.5 (50.3) | |||||
| ORF1b | CavV | 92.6 (96.0) | 83.7 (85.3) | 71.0 (70.4) | 74.3 (74.2) | |
| NDiV | 83.9 (85.7) | 71.2 (70.8) | 74.4 (74.9) | |||
| HanaV | 69.8 (68.3) | 73.6 (70.0) | ||||
| MénoV | 69.7 (68.7) | |||||
| ORF2a | CavV | 90.7 (87.7) | 84.1 (80.3) | 66.5 (57.1) | 68.8 (61.2) | |
| NDiV | 85.1 (81.7) | 66.7 (57.8) | 70.3 (62.7) | |||
| HanaV | 67.1 (58.2) | 70.0 (63.7) | ||||
| MénoV | 64.5 (56.9) | |||||
| ORF2b | CavV | 88.8 (90.2) | 78.3 (78.6) | 60.2 (50.9) | 65.8 (58.3) | |
| NDiV | 79.3 (78.4) | 60.3 (50.7) | 66.9 (58.8) | |||
| HanaV | 62.9 (55.1) | 66.1 (58.3) | ||||
| MénoV | 59.4 (52.6) | |||||
| ORF3a | CavV | 91.2 (93.1) | 82.2 (83.6) | 63.7 (57.9) | 73.4 (68.5) | |
| NDiV | 83.6 (84.9) | 64.2 (58.4) | 72.0 (69.1) | |||
| HanaV | 65.4 (58.1) | 69.8 (69.1) | ||||
| MénoV | 62.9 (56.5) | |||||
| ORF3b | CavV | 93.7 (90.6) | 89.2 (81.2) | 63.9 (47.5) | 71.3 (60.7) | |
| NDiV | 86.0 (78.6) | 64.9 (50.0) | 68.9 (58.2) | |||
| HanaV | 64.2 (49.2) | 70.5 (58.2) | ||||
| MénoV | 61.5 (50.8) | |||||