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. 2013 May;87(10):5318–5330. doi: 10.1128/JVI.03151-12

Table 1.

Summary of NMR data and model calculation statisticsa

Parameter group and parameter MNV VPg 11-85 FCV VPg 9-79
Restraints
    Total no. of restraints 1,248 1,335
    No. of NOE-derived restraints 1,176 1,172
    No. of unambiguous NOE restraints 618 867
    No. of ambiguous NOE restraints 558 305
    No. of intraresidual NOE restraints (|i − j| = 0)d 262 373
    No. of sequential NOE restraints (|i − j| = 1)d 106 197
    No. of medium-range NOE restraints (1 < |i − j| ≤ 4)d 140 153
    No. of long-range NOE restraints (|i − j| >4)d 110 144
    No. of Ψ/Φ dihedral angle restraints 72 84
    No. of HN RDC restraints - 37
    No. of hydrogen bond restraints - 42
RMSD from exptl restraintsb
    Distance (Å) 0.032 ± 0.001 0.057 ± 0.002
    Dihedral angle (°) 0.16 ± 0.07 0.755 ± 0.13
NOE/dihedral violations
    No. of NOE violations >0.5 Å 0 0.4 ± 0.5
    No. of NOE violations >0.3 Å 0.60 ± 0.66 4.55 ± 1.6
    No. of dihedral violations >5° 0 0
RMSD from idealized covalent geometryb
    Bond (Å) 0.0038 ± 0.0001 0.0058 ± 0.0002
    Angle (°) 0.48 ± 0.01 0.76 ± 0.02
    Impropers (°) 1.15 ± 0.06 2.01 ± 0.08
Energies (kcal/mol)b
    Etotal −2,673.45 ± 86.02 −2,047.81 ± 71.2
    ENOE 59.98 ± 1.84 198.41 ± 15.1
    Ebond 17.74 ± 1.38 36.61 ± 2.4
    Eangle 78.53 ± 4.10 165.8 ± 10.9
    Evdw −626.53 ± 6.15 −655.064 ± 7.0
Coordinate RMSD (Å)b
    Backbone atoms in secondary structure 0.32 ± 0.1 0.17 ± 0.03
    All heavy atoms in secondary structure 0.81 ± 0.1 0.54 ± 0.1
    All backbone atoms 6.61 ± 1.8 0.36 ± 0.1
    All heavy atoms 7.12 ± 1.8 0.66 ± 0.1
Ramachandran plotb,c
    Most favored (%) 99.6 82.3
    Allowed (%) 0.4 14.4
    Disallowed (%) 0 3.3
    PDB ID 2M4G 2M4H
a

Structure statistics for MNV VPg 11-85 and FCV VPg 9-79. Averages are given with one standard deviation of the mean.

b

Determined with an ensemble of the lowest-energy 20 structures which were water refined.

c

Ramachandran statistics were calculated using MolProbity (65). These were calculated using the core domains of the proteins as determined by MolProbity (MNV VPg 21-55 and FCV VPg 17-73). PDB ID, Protein Data Bank identification number.