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. 2013 May;87(10):5784–5799. doi: 10.1128/JVI.00155-13

Table 4.

Genetic structure of Blainvillea yellow spot virus, Tomato chlorotic mottle virus, Tomato common mosaic virus, Tomato severe rugose virus, and Tomato yellow vein streak virus populations from Rio de Janeiro and Minas Gerais states, Brazila

Population No. of sequences Genome size (nt) s Eta k π Mutation frequency h Hd θ-w θ-Eta
DNA-A
    BlYSV (Viçosa) 7 2,661 200 211 65.6 0.0247 1.1 × 10−2 7 1.000 0.0307 0.0323
    ToCmMV (Total) 22 2,560 103 104 36.6 0.0143 1.8 × 10−3 20 0.987 0.0110 0.0111
        Paty do Alferes 10 2,560 11 11 2.2 0.0009 4.3 × 10−4 8 0.933 0.0015 0.0015
        Coimbra 12 2,560 91 92 26.3 0.0103 3.0 × 10−3 7 1.000 0.0312 0.0321
    ToCMoV (Total)b 22 2,619 135 138 18.4 0.0070 2.4 × 10−3 22 1.000 0.0141 0.0144
        Florestal 20 2,619 120 122 16.6 0.0063 2.3 × 10−3 20 1.000 0.0129 0.0131
    ToSRV (Total)c 27 2,588 148 159 26.5 0.0102 2.3 × 10−3 26 0.997 0.0148 0.0159
        Carandaí 19 2,589 73 74 10.5 0.0040 1.5 × 10−3 18 0.994 0.0080 0.0081
        Florestal 5 2,592 37 37 19.0 0.0073 2.8 × 10−3 5 1.000 0.0068 0.0068
    ToYVSV (Paty do Alferes) 26 2,562 49 49 5.4 0.0021 7.4 × 10−4 25 0.997 0.0050 0.0050
DNA-B
    BlYSV (Viçosa) 7 2,625 326 346 121.9 0.0464 1.9 × 10−2 7 1.000 0.0506 0.0538
    ToCmMV (Total) 16 2,500 205 214 60.5 0.0242 5.1 × 10−3 14 0.975 0.0248 0.0258
        Paty do Alferes 9 2,500 14 14 3.1 0.0012 6.2 × 10−4 7 0.917 0.0021 0.0021
        Coimbra 7 2,500 191 196 99.8 0.0400 1.1 × 10−2 7 1.000 0.0312 0.0321
    ToCMoV (Total)d 6 2,554 146 146 73.5 0.0288 9.5 × 10−3 5 0.933 0.0250 0.0250
        Carandaí 4 2,557 22 22 11.0 0.0043 2.2 × 10−3 4 1.000 0.0046 0.0046
    ToSRV (Carandaí) 7 2,568 50 50 15.9 0.0062 2.8 × 10−3 7 1.000 0.0079 0.0079
    ToYVSV (Paty do Alferes) 13 2,507 51 51 10.6 0.0042 1.6 × 10−3 12 0.987 0.0066 0.0066
a

BlYSV, Blainvillea yellow spot virus; ToCMoV, Tomato chlorotic mottle virus; ToCmMV, Tomato common mosaic virus; ToSRV, Tomato severe rugose virus; ToYVSV, Tomato yellow vein streak virus; s, total number of segregating sites; Eta, total number of mutations; k, average number of nucleotide differences between sequences (Tajima's estimate of the population mutation rate [θ[ρσθβ]); π, nucleotide diversity; h, haplotype number; Hd, haplotype diversity; θ-w, Watterson's estimate of the population mutation rate based on the total number of segregating sites; θ-Eta, Watterson's estimate of the population mutation rate based on the total number of mutations.

b

Data include two sequences from Carandaí.

c

Data include two sequences from Jaíba and one sequence from Viçosa.

d

Data include two sequences from Florestal.