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. Author manuscript; available in PMC: 2013 May 9.
Published in final edited form as: Nat Methods. 2012 Nov 6;9(11):1069–1076. doi: 10.1038/nmeth.2212

Figure 4.

Figure 4

Examples of plugin outputs. (a) AgilentLiteratureSearch plugin. Human transcription factors FOS and JUN are input as an example. A network created by literature mining (left) and abstracts of scientific papers used to derive the network (right) are shown. (b) Application of MCODE to the mouse protein-protein interaction network in BioGRID. Modules extracted from the network are shown. (c) BiNGO plugin. A subnetwork containing dense kinase-substrate interactions is analyzed, with cell cycle related genes found to be enriched.