Table 2.
Proteins identified from proteomic studies with between 2-5 fold enrichments of spectral counts in probe-labeled samples relative to controls. References are included for those proteins that have been identified in other global proteomic studies.
| P61604 | CH10 | 10 kDa heat shock protein, mitochondrial |
| P31946 | 1433B | 14-3-3 protein beta/alpha |
| Q04917 | 1433F | 14-3-3 protein eta |
| P61981 | 1433G | 14-3-3 protein gamma |
| P43686 | PRS6B | 26S protease regulatory subunit 6B |
| P62195 | PRS8 | 26S protease regulatory subunit 8 |
| Q99460 | PSMD1 | 26S proteasome non-ATPase regulatory subunit 1 |
| Q6NVY1 | HIBCH | 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial |
| P62841 | RS15 | 40S ribosomal protein S15 |
| P08708 | RS17 | 40S ribosomal protein S17 |
| P15880 | RS2 | 40S ribosomal protein S2 |
| P23396 | RS3 | 40S ribosomal protein S3 |
| P61247 | RS3A | 40S ribosomal protein S3a |
| P62081 | RS7 | 40S ribosomal protein S7 |
| P46781 | RS9 | 40S ribosomal protein S9 |
| Q5TFE4 | NT5D1 | 5'-nucleotidase domain-containing protein 1 |
| P17858 | K6PL | 6-phosphofructokinase, liver type25 |
| P08237 | K6PF | 6-phosphofructokinase, muscle type |
| P10809 | CH60 | 60 kDa heat shock protein, mitochondrial |
| P46778 | RL21 | 60S ribosomal protein L21 |
| P62750 | RL23A | 60S ribosomal protein L23a |
| P36578 | RL4 | 60S ribosomal protein L4 |
| P46777 | RL5 | 60S ribosomal protein L5 |
| P62424 | RL7A | 60S ribosomal protein L7a |
| P11021 | GRP78 | 78 kDa glucose-regulated protein |
| P24752 | THIL | Acetyl-CoA acetyltransferase, mitochondrial |
| O15144 | ARPC2 | Actin-related protein 2/3 complex subunit 2 |
| O15145 | ARPC3 | Actin-related protein 2/3 complex subunit 3 |
| P55263 | ADK | Adenosine kinase |
| P49588 | SYAC | Alanyl-tRNA synthetase, cytoplasmic |
| P61163 | ACTZ | Alpha-centractin |
| P08133 | ANXA6 | Annexin A6 |
| Q9BZZ5 | API5 | Apoptosis inhibitor 5 |
| Q96P48 | ARAP1 | Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 130 |
| P54136 | SYRC | Arginyl-tRNA synthetase, cytoplasmic |
| P08243 | ASNS | Asparagine synthetase [glutamine-hydrolyzing] |
| Q13057 | COASY | Bifunctional coenzyme A synthase |
| P27797 | CALR | Calreticulin |
| O43852 | CALU | Calumenin |
| O00299 | CLIC1 | Chloride intracellular channel protein 125 |
| Q9Y696 | CLIC4 | Chloride intracellular channel protein 4 |
| Q00610 | CLH1 | Clathrin heavy chain 125 |
| P53621 | COPA | Coatomer subunit alpha25 |
| Q07021 | C1QBP | Complement component 1 Q subcomponent-binding protein, mitochondrial |
| P04080 | CYTB | Cystatin-B |
| Q9UHD1 | CHRD1 | Cysteine and histidine-rich domain-containing protein 1 |
| P28838 | AMPL | Cytosol aminopeptidase |
| O00154 | BACH | Cytosolic acyl coenzyme A thioester hydrolase |
| Q96KP4 | CNDP2 | Cytosolic non-specific dipeptidase |
| P54886 | P5CS | Delta-1-pyrroline-5-carboxylate synthase |
| P15924 | DESP | Desmoplakin |
| Q16555 | DPYL2 | Dihydropyrimidinase-related protein 2 |
| P28340 | DPOD1 | DNA polymerase delta catalytic subunit |
| P49736 | MCM2 | DNA replication licensing factor MCM2 |
| P31689 | DNJA1 | DnaJ homolog subfamily A member 1 |
| Q9H223 | EHD4 | EH domain-containing protein25 |
| P13804 | ETFA | Electron transfer flavoprotein subunit alpha, mitochondrial |
| P13639 | EF2 | Elongation factor 2 |
| P49411 | EFTU | Elongation factor Tu, mitochondrial |
| P60842 | IF4A1 | Eukaryotic initiation factor 4A-I |
| P62495 | ERF1 | Eukaryotic peptide chain release factor subunit 1 |
| P60228 | EIF3E | Eukaryotic translation initiation factor 3 subunit E |
| Q15056 | IF4H | Eukaryotic translation initiation factor 4H |
| P63241 | IF5A1 | Eukaryotic translation initiation factor 5A-1 |
| P49327 | FAS | Fatty acid synthase25 |
| O75369 | FLNB | Filamin-B25 |
| P39748 | FEN1 | Flap endonuclease 1 |
| P07954 | FUMH | Fumarate hydratase, mitochondrial |
| P17931 | LEG3 | Galectin-325 |
| Q13630 | FCL | GDP-L-fucose synthase |
| P06396 | GELS | Gelsolin24 |
| O94925 | GLSK | Glutaminase kidney isoform, mitochondrial |
| Q9Y2Q3 | GSTK1 | Glutathione S-transferase kappa 1 |
| P21266 | GSTM3 | Glutathione S-transferase Mu 3 |
| P04406 | G3P | Glyceraldehyde-3-phosphate dehydrogenase25 |
| P11216 | PYGB | Glycogen phosphorylase, brain form |
| P08238 | HS90B | Heat shock protein HSP 90-beta |
| Q14103 | HNRPD | Heterogeneous nuclear ribonucleoprotein D0 |
| P52597 | HNRPF | Heterogeneous nuclear ribonucleoprotein F |
| P61978 | HNRPK | Heterogeneous nuclear ribonucleoprotein K |
| P26583 | HMGB2 | High mobility group protein B2 |
| Q16836 | HCDH | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial |
| Q9UI26 | IPO11 | Importin-11 |
| P50213 | IDH3A | Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial |
| P26440 | IVD | Isovaleryl-CoA dehydrogenase, mitochondrial |
| P14923 | PLAK | Junction plakoglobin |
| P08779 | K1C16 | Keratin, type I cytoskeletal 16 |
| P35527 | K1C9 | Keratin, type I cytoskeletal 9 |
| P04264 | K2C1 | Keratin, type II cytoskeletal 1 |
| P35908 | K22E | Keratin, type II cytoskeletal 2 epidermal |
| P33176 | KINH | Kinesin-1 heavy chain25 |
| P07195 | LDHB | L-lactate dehydrogenase B chain |
| Q32MZ4 | LRRF1 | Leucine-rich repeat flightless-interacting protein 1 |
| Q8N1G4 | LRC47 | Leucine-rich repeat-containing protein 47 |
| O60711 | LPXN | Leupaxin |
| P40925 | MDHC | Malate dehydrogenase, cytoplasmic |
| Q9UNF1 | MAGD2 | Melanoma-associated antigen D2 |
| Q15691 | MARE1 | Microtubule-associated protein RP/EB family member 125 |
| P28482 | MK01 | Mitogen-activated protein kinase 125 |
| P60660 | MYL6 | Myosin light polypeptide 625 |
| O00159 | MYO1C | Myosin-Ic |
| P51606 | RENBP | N-acylglucosamine 2-epimerase |
| Q14697 | GANAB | Neutral alpha-glucosidase AB |
| Q15233 | NONO | Non-POU domain-containing octamer-binding protein |
| Q8TAT6 | NPL4 | Nuclear protein localization protein 4 homolog |
| P12270 | TPR | Nucleoprotein TPR |
| Q8WXF1 | PSPC1 | Paraspeckle component 1 |
| P62937 | PPIA | Peptidyl-prolyl cis-trans isomerase A |
| Q13526 | PIN1 | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 |
| Q13162 | PRDX4 | Peroxiredoxin-430 |
| Q9Y2H2 | SAC2 | Phosphatidylinositide phosphatase SAC2 |
| Q13492 | PICAL | Phosphatidylinositol-binding clathrin assembly protein24 |
| Q15149 | PLEC | Plectin |
| Q6P2Q9 | PRP8 | Pre-mRNA-processing-splicing factor 8 |
| Q99471 | PFD5 | Prefoldin subunit 5 |
| P02545 | LMNA | Prelamin-A/C |
| P26196 | DDX6 | Probable ATP-dependent RNA helicase DDX6 |
| P28066 | PSA5 | Proteasome subunit alpha type-5 |
| P20618 | PSB1 | Proteasome subunit beta type-1 |
| P49720 | PSB3 | Proteasome subunit beta type-3 |
| P28072 | PSB6 | Proteasome subunit beta type-6 |
| Q99436 | PSB7 | Proteasome subunit beta type-7 |
| P28062 | PSB8 | Proteasome subunit beta type-8 |
| P28065 | PSB9 | Proteasome subunit beta type-9 |
| P30101 | PDIA3 | Protein disulfide-isomerase A3 |
| P07237 | PDIA1 | Protein disulfide-isomerase |
| Q9NUQ9 | FA49B | Protein FAM49B |
| P22061 | PIMT | Protein-L-isoaspartate(D-aspartate) O-methyltransferase |
| Q9NVS9 | PNPO | Pyridoxine-5'-phosphate oxidase |
| P50395 | GDIB | Rab GDP dissociation inhibitor beta |
| P31153 | METK2 | S-adenosylmethionine synthase isoform type-2 |
| P10768 | ESTD | S-formylglutathione hydrolase |
| Q16181 | SEP3 | Septin-725 |
| Q9UHD8 | SEP10 | Septin-925 |
| Q13501 | SQSTM | Sequestosome-1 |
| P63151 | 2ABA | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha Isoform25 |
| Q15257 | PTPA | Serine/threonine-protein phosphatase 2A activator |
| P62136 | PP1A | Serine/threonine-protein phosphatase PP1-alpha catalytic subunit25 |
| P50454 | SERPH | Serpin H130 |
| Q01082 | SPTB2 | Spectrin beta chain, brain 125 |
| Q15637 | SF01 | Splicing factor 1 |
| Q13435 | SF3B2 | Splicing factor 3B subunit 2 |
| Q15393 | SF3B3 | Splicing factor 3B subunit 3 |
| P26368 | U2AF2 | Splicing factor U2AF 65 kDa subunit |
| P31948 | STIP1 | Stress-induced-phosphoprotein 1 |
| Q9UH65 | SWP70 | Switch-associated protein 7030 |
| Q99536 | VAT1 | Synaptic vesicle membrane protein VAT-1 homolog |
| P78371 | TCPB | T-complex protein 1 subunit beta |
| P48643 | TCPE | T-complex protein 1 subunit epsilon |
| P49368 | TCPG | T-complex protein 1 subunit gamma |
| O95881 | TXD12 | Thioredoxin domain-containing protein 12 |
| Q15645 | TRP13 | Thyroid receptor-interacting protein 13 |
| P20290 | BTF3 | Transcription factor BTF3 |
| Q8WXI9 | P66B | Transcriptional repressor p66-beta |
| Q9Y5L0 | TNPO3 | Transportin-3 |
| P22102 | PUR2 | Trifunctional purine biosynthetic protein adenosine-3 |
| P60174 | TPIS | Triosephosphate isomerase |
| P23381 | SYWC | Tryptophanyl-tRNA synthetase, cytoplasmic |
| P07437 | TBB5 | Tubulin beta chain |
| P04350 | TBB4 | Tubulin beta-4 chain |
| Q6IBS0 | TWF2 | Twinfilin-2 |
| O15042 | SR140 | U2-associated protein SR140 |
| Q93009 | UBP7 | Ubiquitin carboxyl-terminal hydrolase 7 |
| P61088 | UBE2N | Ubiquitin-conjugating enzyme E2 N25 |
| Q04323 | UBXN1 | UBX domain-containing protein 1 |
| P54727 | RD23B | UV excision repair protein RAD23 homolog B |
| P50552 | VASP | Vasodilator |
| Q9NQW7 | XPP1 | Xaa |