Table 1.

Summary of individual dye-label samples (dye-channels)

	Array 1	Array 2	Array 3	Array 4	Array 5
Alexa594 Median (MAD)	11.67 (1.94)	11.46 (1.99)	11.67 (1.87)	11.62 (1.84)	11.06 (2.10)
Cy5 Median (MAD)	10.89 (2.33)	10.85 (2.36)	11.18 (2.28)	10.96 (2.30)	10.62 (2.21)
Cy3 Median (MAD)	11.48 (1.86)	11.56 (1.94)	11.82 (1.91)	11.76 (1.90)	11.13 (1.84)

Median and median absolute deviation for log-transformed absolute expression values of individual samples (i.e. dye-label channels), prior to normalisation.