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. 2013 Jan 28;12(5):1192–1203. doi: 10.1074/mcp.M112.022145

Table I. The ratio of expression LepB1 mutant/WT for protein complexes/proteins involved/related to photosynthesis and respiration. In the first iTRAQ analyses WT was labeled with iTRAQ reagent 114 and LepB1 mutant with 115, 116, and 117. In the second iTRAQ analyses WT was labeled with 114 and 116 and lepB1 mutant with 115 and 117.

ORF Name TMHMMa, SPb 1st iTRAQ
 2nd iTRAQ
 Average ratio (geometric) S.D. (log scale)
115:114 116:114 117:114 115:114 117:114 115:116 117:116
PSI, plastocyanin
    Slr1834 PsaA 11 0.42 0.42 0.43 0.58 0.49 0.60 0.51 0.49 0.14
    Slr1835 PsaB 11 0.44 0.47 0.44 0.61 0.54 0.62 0.55 0.52 0.13
    Sll0819 PsaF 2, sec 0.36 0.36 0.40 0.55 0.47 0.57 0.48 0.45 0.18
    Slr1655 PsaL 3 0.36 0.43 0.46 0.55 0.48 0.54 0.47 0.46 0.14
    Ssl0563 PsaC 0.48 0.49 0.27 0.59 0.45 0.63 0.47 0.47 0.25
    Slr0737 PsaD 0.27 0.27 0.33 0.54 0.46 0.57 0.48 0.40 0.30
    Ssr2831 PsaE 0.35 0.33 0.36 0.51 0.45 0.52 0.46 0.42 0.18
    Sll0199 Plastocyanin sec 1.36 1.27 1.20 1.44 1.65 1.25 1.43 1.37 0.10
Cytb6f
    Sll1316 Rieske protein PetC1 1 0.66 0.65 0.69 0.66 0.61 0.70 0.65 0.66 0.04
    Sll1317 Cyt f PetA 1, sec 0.59 0.53 0.55 0.68 0.60 0.71 0.62 0.61 0.10
    Slr0342 Cyt b6 PetB 4 0.43 0.43 0.54 0.71 0.71 0.72 0.72 0.59 0.23
    Slr0343 Subunit IV PetD 3 0.55 0.54 0.68 0.67 0.60 0.65 0.58 0.61 0.16
PSII
    Slr1311/Sll1867 D1 5 1.03 1.06 1.28 1.04 1.07 1.09 1.09 1.09 0.07
    Slr0927/Sll0849 D2 6 1.33 1.33 1.18 1.06 1.01 1.07 1.02 1.14 0.11
    Slr0906 CP47 6 1.13 1.08 1.12 1.08 1.09 1.07 1.07 1.09 0.02
    Sll0851 CP43 7 1.08 1.08 1.08 1.07 1.03 1.09 1.04 1.07 0.02
    Ssr3451 Cyt b559 alpha subunit 1 1.56 1.32 1.06 1.04 1.02 0.98 0.96 1.12 0.17
    Ssl2598 PsbH 1 2.22 1.63 0.82 1.09 0.94 1.19 1.02 1.21 0.32
    Sll0427 PsbO sec 1.30 1.22 1.18 1.22 1.16 1.24 1.17 1.21 0.03
    Sll1194 PsbU sec 1.63 1.56 1.60 1.31 1.38 1.35 1.42 1.46 0.08
    Sll0258 PsbV, cyt c550 sec 1.28 1.28 1.32 1.18 1.08 1.22 1.11 1.21 0.07
    Sll1638 PsbQ LP 1.18 1.07 0.79 1.11 1.11 1.10 1.10 1.06 0.12
    Sll1398 Psb28 1.21 1.06 0.73 0.98 1.05 0.92 0.99 0.98 0.15
    Slr1645 Psb27 LP 1.61 1.45 0.88 1.11 1.07 1.05 1.00 1.14 0.20
Phycobiliproteins
    Slr2067 Allophycocyanin alpha subunit 0.46 0.44 0.47 0.66 0.59 0.65 0.58 0.54 0.15
    Ssl3093 Phycobilisome small rod linker, CpcD 0.58 0.57 0.51 0.65 0.63 0.67 0.66 0.61 0.09
    Sll1577 Phycocyanin b subunit 0.60 0.56 0.61 0.74 0.64 0.75 0.64 0.65 0.10
    Sll1578 Phycocyanin alpha subunit 0.62 0.63 0.64 0.67 0.62 0.68 0.63 0.64 0.03
    Slr2051 Phycobilisome rod-core linker, CpcG 0.65 0.62 0.67 0.75 0.70 0.77 0.72 0.70 0.07
    Sll1580 Phycobilisome Linker polypeptide 0.68 0.68 0.74 0.84 0.84 0.88 0.88 0.79 0.11
    Sll0928 Allophycocyanin B 0.70 0.67 0.67 0.73 0.68 0.71 0.67 0.69 0.03
    Ssr3383 Phycobilisome linker domain protein CpcD 0.77 0.65 0.46 0.79 0.79 0.80 0.80 0.71 0.19
    Sll1579 Phycobilisome linker polypeptide 0.72 0.73 0.72 0.87 0.84 0.87 0.84 0.80 0.08
    Slr1986 Allophycocyanin beta subunit 0.82 0.72 0.65 0.72 0.69 0.73 0.70 0.72 0.07
    Sll1471 Phycobilisome rod-core linker, CpcG 0.72 0.74 0.83 0.88 0.90 0.89 0.91 0.84 0.09
    Slr1459 Allophycocyanin, beta subunit 0.76 0.76 0.71 0.74 0.68 0.75 0.69 0.73 0.04
    Slr0335 Phycobilisome core membrane linker, ApcE 0.89 0.86 0.89 0.93 0.92 0.91 0.90 0.90 0.02
Pigment biosynthesis
    Slr0536 Uroporphyrinogen decarboxylase 0.63 0.60 0.69 0.68 0.69 0.73 0.74 0.68 0.07
    Sll1214 Magnesium-protoporphyrin IX monomethyl ester cyclase 0.33 0.34 0.35 0.56 0.48 0.58 0.50 0.44 0.23
    Sll1091 Geranylgeranyl reductase, ChlP 0.45 0.45 0.46 0.68 0.61 0.67 0.60 0.55 0.18
    Slr0144 hypothetical protein 4-vinyl reductase 4VR 0.49 0.53 0.56 0.63 0.65 0.61 0.62 0.58 0.10
Redox proteins
    Slr5088 short-chain dehydrogenase/ reductase SDR 2.94 2.70 3.24 1.97 2.23 1.80 2.05 2.37 0.21
    Slr1379 Cyt bd ubiquinol oxidase, CydA 9 2.01 1.93 2.23 1.73 1.93 1.70 1.90 1.91 0.08
    Sll1182 Rieske iron-sulfur protein, PetC3 Tat/LP 2.20 2.39 2.36 1.27 1.17 1.42 1.31 1.66 0.30
    Slr1239 Pyridine nucleotide transhydrogenase, alpha subunit 5 0.50 0.52 0.56 0.69 0.63 0.74 0.66 0.61 0.14

a Number of transmembrane helices known or predicted by the TMHMM program (http://www.cbs.dtu.dk/services/TMHMM-2.0/).

b Known or putative sec or lipoprotein signals using SignalP 3.0 (http://www.cbs.dtu.dk/services/SignalP-3.0/) and LipoP (http://www.cbs.dtu.dk/services/LipoP/), respectively.