Table 3.

SNPs associated with OC lesions scores according to GWAS.

SNP	Trait	SSC	SNP location (bp)	p-value	q-value	OR	95% CI	Gene nearby	SSC	Gene location (bp)
ALGA0076446	CMF	14	25,436,055	2.31E−05	0.05	0.47	0.23–0.94	TMEM132D	14	25,391,692
MARC0098684	CMF	14	36,101,763	2.70E−05	0.05	0.45	0.22–0.94	C12orf49	14	35,976,703
MARC0084086	CMF	14	36,142,739	2.70E−05	0.05	0.45	0.22–0.94	C12orf49	14	35,976,703
MARC0093124	CMF	14	36,946,375	4.94E−05	0.09	0.46	0.22–0.97	MED13L	14	36,579,069
ASGA0062794	CMF	14	38,228,607	4.16E−05	0.08	0.45	0.21–0.96	TBX3, TBX5	14	37,979,782; 38,174,956
MARC0017670	CMH	3	63,326,409	4.80E−05	0.08	0.31	0.10–0.95	MOB1A	3	63,374,263
H3GA0025124	CMH	8	74,536,593	4.80E−05	0.08	0.31	0.10–0.95	TBC1D9	8	74,529,483
M1GA0019792	CMH	14	144,905,832	1.77E−06	0.00	0.28	0.10–0.79	PTPRE	14	144,447,776
M1GA0019802	CMH	14	145,226,743	4.86E−05	0.08	0.34	0.12–0.96	MGMT	14	145,738,712
MARC0007896	CMH	18	15,776,737	2.96E−05	0.06	0.35	0.13–0.93	MKLN1	18	15,657,789
MARC0024273	CMH	18	7,491,971	2.96E−05	0.06	0.35	0.13–0.93	BRAF	18	7,416,343
MARC0069757	DEU	5	83,513,211	4.57E−05	0.09	1.95	1.03–3.67	NDUFA12	5	83,512,621
ASGA0060524	DEU	14	3,467,306	2.12E−05	0.04	1.99	1.06–3.75	SPTLC1	14	3,487,545
ALGA0105690	DEU	18	2,442,820	4.06E−05	0.08	2.79	1.05–7.36	DPP6	18	2,430,867
H3GA0010162	OCcat	3	90,049,785	4.42E−05	0.08	0.50	0.25–0.98	PLEKHH2	3	90,049,914
MARC0069757	OCcat	5	83,513,211	4.79E−06	0.01	0.42	0.20–0.88	NDUFA12	5	83,512,621
M1GA0007707	OCcat	5	16,709,358	9.11E−06	0.02	2.29	1.11–4.75	KRT8	5	16,714,898
MARC0100227	OCcat	8	34,181,277	2.67E−05	0.05	0.45	0.22–0.94	RASL11B	8	34,044,032
ASGA0083649	OCcat	10	11,773,268	2.80E−05	0.05	2.45	1.07–5.65	BROX	10	11,596,786

CMF, condylus medialis femoris; CMH, medial part of condyles humeri; DEU, distal epiphyseal cartilage of ulna; OCcat, category of animals with either high (OCsum ≥ 12) or low (OCsum ≤ 8) OCsum.