Table 1.
Undermethylated intergenic sites identified by methyl HTM-seq
| Chromosome | Positiona | Intergenic locusa | Frequencyb | Fold overrepresentionc |
|---|---|---|---|---|
| Dam data | ||||
| chrI | 1306007 | VC1231-VC1232 | 6.96E−04 | 26.2 |
| chrI | 1306010 | VC1231-VC1232 | 5.74E−04 | 21.6 |
| chrI | 1933145 | VC1783-VC1784 | 3.28E−04 | 12.4 |
| chrI | 1933148 | VC1783-VC1784 | 4.60E−04 | 17.3 |
| chrI | 2364224 | K139p05-K139p04 | 2.02E−04 | 7.6 |
| chrI | 2364255 | K139p05-K139p04 | 1.22E−04 | 4.6 |
| chrII | 68810 | VCA0062-VCA0063 | 3.11E−04 | 11.7 |
| chrII | 68813 | VCA0062-VCA0063 | 1.07E−03 | 40.3 |
| VchM data | ||||
| chrI | 296268 | VC0286-VC0287 | 1.10E−02 | 47.0 |
| chrI | 296271 | VC0286-VC0287 | 9.66E−03 | 41.4 |
| chrI | 1356851 | VC1280-VC1281 | 5.55E−03 | 23.8 |
| chrI | 1356854 | VC1280-VC1281 | 2.72E−03 | 11.6 |
| chrI | 1670727 | VC1558-VC1559 | 5.27E−03 | 22.6 |
| chrI | 1670730 | VC1558-VC1559 | 3.80E−03 | 16.3 |
a
The position and locus are based on the annotated N16961 genome containing the K139 prophage genome in chromosome I. The unmethylated site is located in the intergenic region between the indicated loci.
b
Indicates the frequency of reads mapping to the indicated site relative to the total number of reads mapped.
c
Indicates the degree of overrepresentation of the reads at the indicated site relative to the mean number of reads obtained for all sites.