Table 1.
Gene association network generated by querying thylakoid ascorbate peroxidase (tAPX, AT1G77490) using the ALPINE tool
| AT1G77490 |
thylakoidal ascorbate |
Plastid |
PlastidRedox.Ascorbate and Glutathione.Ascorbate |
3.41 |
1.51E-04 |
| AT4G39970 |
Haloacid dehalogenase‒like hydrolase (HAD) superfamily |
Plastid |
Not Assigned. No Ontology |
2.53 |
1.15E-03 |
| AT5G51820 |
phosphoglucomutase |
Plastid |
Glycolysis.Plastid Branch.Phosphoglucomutase |
1.5 |
4.98E-02 |
| AT4G27700 |
Rhodanese/Cell cycle control phosphatase superfamily |
Plastid |
Misc.Rhodanese |
1.48 |
8.16E-03 |
| AT1G04420 |
NAD(P)‒linked oxidoreductase superfamily protein |
Plastid |
Minor CHO Metabolism.Others |
1.47 |
4.78E-04 |
| AT5G27290 |
AT5G27290unknown protein |
Plastid |
Not Assigned.Unknown |
1.36 |
4.71E-02 |
| AT5G65220 |
AT5G65220Ribosomal L29 family protein |
Plastid |
Protein.Synthesis.Ribosomal Protein.Prokaryotic. |
−1.32 |
4.09E-02 |
| AT4G21280 |
AT4G21280photosystem II subunit QA |
Plastid |
PS.Lightreaction.Photosystem II.PSII Polypeptide Subunits |
−1.33 |
1.45E-02 |
| AT1G32550 |
2Fe‒2S ferredoxin‒like superfamily protein |
N/A |
Misc.Other Ferredoxins and Rieske Domain |
−1.33 |
4.95E-02 |
| AT1G76450 |
Photosystem II reaction center PsbP family protein |
Plastid |
PS.Lightreaction.Photosystem II.PSII Polypeptide Subunits |
−1.37 |
1.34E-02 |
| AT2G43560 |
FKBP‒like peptidyl‒prolyl cis‒trans isomerase family protein |
Plastid |
Protein.Folding |
−1.37 |
1.54E-02 |
| AT3G52150 |
RNA‒binding (RRM/RBD/RNP motifs) family protein |
Plastid |
RNA.Regulation of Transcription.Unclassified |
−1.41 |
2.59E-02 |
| AT3G18890 |
NAD(P)‒binding Rossmann‒fold superfamily protein |
Plastid |
Signalling.Light |
−1.45 |
2.02E-02 |
| AT3G51510 |
unknown protein |
Plastid |
Not Assigned.Unknown |
−1.46 |
1.54E-02 |
| AT1G48350 |
Ribosomal L18p/L5e family protein |
Plastid |
Protein.Synthesis.Ribosomal Protein.Prokaryotic.Chloroplast |
−1.46 |
1.54E-02 |
| AT1G43670 |
Inositol monophosphatase family protein |
Membrane |
Metabolism.Synthesis.Sucrose.F |
−1.51 |
3.97E-02 |
| AT1G75690 |
DnaJ/Hsp40 cysteine‒rich domain superfamily protein |
Plastid |
Protein.Folding |
−1.6 |
4.19E-02 |
| AT5G14910 |
Heavy metal transport/detoxification |
Plastid |
Not Assigned.No Ontology |
−1.62 |
3.44E-02 |
| AT1G21350 |
Thioredoxin super family protein |
Plastid |
Not Assigned.Unknown |
−1.63 |
1.33E-02 |
| AT5G13510 |
Ribosomal protein L10 family protein |
Plastid |
Protein.Synthesis.Ribosomal Protein.Prokaryotic. |
−1.69 |
3.43E-05 |
| AT3G48420 |
Haloacid dehalogenase‒like hydrolase (HAD) superfamily |
Plastid |
Not Assigned.Unknown |
−1.7 |
2.50E-02 |
| AT1G16080 |
unknown protein |
Plastid |
Not Assigned.Unknown |
−1.73 |
4.36E-03 |
| AT4G09650 |
ATP SYNTHASE DELTA‒SUBUNIT; hydrogen ion |
Plastid |
Not Assigned.Unknown |
−1.9 |
3.44E-04 |
| AT3G54210 |
Ribosomal protein L17 family protein |
Plastid |
Protein.Synthesis.Ribosomal Protein.Prokaryotic.Chloroplast. |
−1.92 |
4.44E-04 |
| AT3G61870 |
unknown protein |
Plastid |
Not Assigned.Unknown |
−2.06 |
2.71E-03 |
| AT5G52970 |
thylakoid lumen 15.0 kDa protein |
Plastid |
Not Assigned.No Ontology |
−2.06 |
4.12E-04 |
| AT4G01310 |
Ribosomal L5P family protein |
Plastid |
Protein.Synthesis.Ribosomal Protein.Prokaryotic. |
−2.42 |
8.36E-04 |
| AT5G42070 | unknown protein | Plastid | Not Assigned.Unknown | −3.01 | 2.08E-05 |
All associations were found to be co-expression associations, and all 28 genes in the network demonstrate a significant (q <0.05) expression value in T5 of the dataset.