Table 2.
Mean number of SNPs and prognostic SNPs included in the fitted prediction models, recovery rate and means/standard deviations of the log-rank p-values from the test set for the proposed method at ρ = 0 and censoring = 30%
|
n |
β |
Mean number of |
Mean number of |
Recovery rate |
Mean (SD) p-value |
|---|---|---|---|---|---|
| selected SNP | selected prognostic SNP | of the log-rank test | |||
| 200 |
0.8 |
6.72 |
5.05 |
0.75 |
<0.0001 (<0.0001) |
| |
1 |
6.13 |
5.18 |
0.85 |
<0.0001 (<0.0001) |
| |
2 |
5.60 |
5.17 |
0.92 |
<0.0001 (<0.0001) |
| 300 |
0.8 |
6.18 |
5.53 |
0.89 |
<0.0001 (<0.0001) |
| 400 | 0.8 | 5.89 | 5.72 | 0.97 | <0.0001 (<0.0001) |