Table 3.
List of 24 SNPs selected by the proposed method from the whole data set of 119 samples, their MaxTest p-values, genetic models, the number of times selected by prediction models fitted during the LOOCV procedure
|
RS ID |
Chr |
Position |
Gene name |
Genetic |
P-value |
Frequency |
|---|---|---|---|---|---|---|
| model g | ||||||
| rs1030254 |
16 |
60696651 |
LOC644649, CDH8, LOC729159 |
3 |
0.00009 |
119 |
| rs1030252 |
16 |
60696869 |
LOC644649, CDH8, LOC729159 |
2 |
0.00010 |
119 |
| rs10798122 |
1 |
187584699 |
PLA2G4A, FAM5C |
1 |
0.00048 |
119 |
| rs10026207 |
4 |
186039201 |
HELT, SLC25A4 |
3 |
0.00233 |
119 |
| rs13333329 |
16 |
1695776 |
CRAMP1L |
3 |
0.00015 |
117 |
| rs2132183 |
3 |
84966867 |
LOC440970,CADM2 |
3 |
0.00149 |
117 |
| rs1950400 |
14 |
27105035 |
MIR4307,NOVA1 |
2 |
0.00040 |
115 |
| rs2155777 |
11 |
133290007 |
OPCML |
3 |
0.00142 |
113 |
| rs1677914 |
12 |
78274425 |
NAV3 |
2 |
0.00283 |
106 |
| rs1476847 |
18 |
9834599 |
RAB31 |
1 |
0.00029 |
102 |
| rs7614596 |
3 |
84986027 |
LOC440970,CADM2 |
2 |
0.00020 |
100 |
| rs2648117 |
4 |
186787096 |
SORBS2 |
3 |
0.00856 |
90 |
| rs1851317 |
15 |
35077786 |
GJD2,ACTC1 |
1 |
0.00999 |
88 |
| rs3790217 |
20 |
19441650 |
SLC24A3 |
2 |
0.00728 |
85 |
| rs4902990 |
14 |
72618432 |
RGS6 |
2 |
0.00004 |
81 |
| rs9482583 |
6 |
125318379 |
RNF217 |
3 |
0.00847 |
79 |
| rs3020444 |
14 |
64791013 |
ESR2 |
3 |
0.00288 |
77 |
| rs10851869 |
15 |
74331083 |
PML |
2 |
0.00036 |
65 |
| rs11986200 |
8 |
22698209 |
PEBP4 |
1 |
0.00222 |
63 |
| rs11260756 |
1 |
16759616 |
SPATA21 |
1 |
0.00827 |
63 |
| rs4968415 |
17 |
60264240 |
MED13,TBC1D3P2 |
1 |
0.00075 |
62 |
| rs12416722 |
11 |
133300460 |
OPCML |
1 |
0.00067 |
59 |
| rs626266 |
12 |
72888187 |
TRHDE |
2 |
0.00070 |
52 |
| rs16852300 | 2 | 167414424 | SCN7A,XIRP2 | 3 | 0.00513 | 33 |