FIG. 1.

Longitudinal analysis of CD4 T cell count and HIV-1 viral load of patient under study. CD4 T cell count (cells/mm³) is indicated with black diamonds (left y-axis) and viral load (log₁₀ copies/ml) is indicated with gray squares (right y-axis). The patient started antiretroviral therapy after the sample at 87 weeks postdiagnosis was taken as indicated with a gray bar. Time points for which population-based sequencing has been performed are indicated with open triangles and time points used for single genome analysis are indicated with closed triangles.