Table 2.
Summary of the contigs present in each kokanee data set
| Total contigs | High coverage data set1 | Shore-unique contigs2 | Stream-unique contigs2 | |
|---|---|---|---|---|
| No. of contigs |
123,547 |
11,074 |
277 |
557 |
| Mean coverage |
7.5 |
37.0 |
6.8 |
8.4 |
| Mean length |
463.7 |
594.8 |
374.2 |
404.2 |
| Mean no. of reads | 14.2 | 77.9 | 8.5 | 12.7 |
1 In the high coverage data set each contig has a minimum length of 200 bases and a minimum of 5× coverage for each ecotype. In addition, this data set has duplicate contigs and contigs that map to pathogen DNA sequences removed.
2 Contigs composed of reads from a single ecotype. Minimum length = 200 bases; minimum coverage = 5×. Contigs that map to pathogen DNA sequences have been removed.