Table 4.
Number of next-generation sequencing reads that aligned to reference sequences from four salmonid pathogens
|
Pathogen |
Number of reads aligned |
|
|---|---|---|
| [GenBank accession] | Stream-spawner library | Shore-spawner library |
|
Flavobacterium psychrophilum |
7,393 |
219 |
| Complete genome | ||
| [AM398681] | ||
|
Gyrodactylus salmonis |
17 |
0 |
| Partial ITS1, complete 5.8S rRNA gene, partial ITS2 | ||
| [JN230351] | ||
|
Saprolegnia ferax |
393 |
1 |
| Mitochondrion, complete genome | ||
| [AY534144] | ||
|
Infectious hematopoietic necrosis virus1 |
285 |
327 |
| Glycoprotein (G) and non-virion protein (NV) genes | ||
| [IHNGNVJ] | ||
1 IHNV was identified in the high coverage data set containing reads from both ecotypes and was not expected to show ecotype specificity.