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. 2013 May 14;11(5):e1001560. doi: 10.1371/journal.pbio.1001560

Figure 5. Synteny of a genomic region in Arabidopsis lyrata scaffold 7 and the Lal2 S-locus region of Leavenworthia.

Figure 5

Mauve alignment of A. lyrata scaffold 7 region between positions 852,500 and 1,060,200 (from gene AT4G37830/NCBI gene ID 9303002 to AT4G39950/NCBI gene ID 9302972) and a selected region of the a4 fosmid clone sequence. Collinear and homologous regions are represented by similarly colored blocks and are connected by lines. In the Leavenworthia sequence, the purple block below the thin black line represents an inverted region. Annotated genes are shown above the A. lyrata panel and below the Leavenworthia panel. Genes were annotated with the A. thaliana reference genome, and the NCBI Gene ID numbers for A. lyrata genes are also given. Red arrows represent genes found in both A. lyrata and Leavenworthia syntenic regions; black arrows represent genes found in A. lyrata only. For clarity, only genes found in the syntenic region of Leavenworthia are identified, and also NCBI Gene ID 9302985. Underlined are SCRL and LaLal2 genes in the Leavenworthia core S-locus region and their orthologous A. lyrata genes NCBI gene ID_9305018 (AlSCRL) and NCBI gene ID_9305017 (AlLal2).