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| Total Number of Raw microsatellite markers | Number of microsatellite markers after cleaning (mrkMS) | Number of CIDR SNPs after cleaning (mrkSNP)* | |
| Map03MS EA | 328 | 290 | 801,273 |
| MarshfieldMS EA | 394 | 336 | 801,286 |
compared to 1,041,304 SNPs before cleaning.
