Table 1.
Putative tasiRNA-generating sugarcane ESTs.
| No. | EST | Start | Strand | Total no. siRNAsa | No. non-redundant tasiRNAsb | P value | Annotation |
|---|---|---|---|---|---|---|---|
| 1 | CA151010 | 22 | 1 | 27 | 5 | 2.67E–04 | Similar to sugarcane TAS3 precursor EU327139.1c |
| 2 | TC140837 | 449 | 1 | 21 | 5 | 3.77E–04 | Similar to sugarcane TAS3 precursor EU327139.1 |
| 3 | CA195273 | 305 | –1 | 8 | 6 | 1.97E–04 | Putative NBS-LRR disease resistance protein |
| 119 | 1 | 15 | 8 | 5.52E–05 | |||
| 4 | CA261958 | 407 | 1 | 80 | 11 | 1.81E–04 | Putative transposase protein |
| 5 | DV735856 | 216 | –1 | 37 | 11 | 7.75E–04 | Hypothetical protein |
| 93 | 1 | 36 | 11 | 9.45E–04 | |||
| 6 | DV548691 | 69 | 1 | 91 | 15 | 6.84E–04 | Saccharum hybrid cultivar R570 retrotransposon |
| 7 | TC119297 | 439 | 1 | 10 | 5 | 3.77E–04 | DNA-directed RNA polymerase subunit RPABC4-like |
a Total number of 21-nt tasiRNAs that perfectly match each sugarcane ESTs.
b Only ESTs perfectly matching at least five non-redundant tasiRNAs (P <0.001) were considered.
c EST identified by Shen et al. (2009).