Table 2.
Items | Characteristics |
---|---|
Contig number |
74,797 |
Library size (bp) |
87,215,117 |
SSR number |
14,250 |
SSR density (/Mbp) |
163.4 |
SSR containing contig |
12,707 |
SSR density (/contig) |
0.19 |
Contig containing more than 1 SSR |
1,415 |
Compound formation SSR | 182 |
MISA [http://pgrc.ipk-gatersleben.de/misa/misa.html] was used to search for simple sequence repeats (SSRs) that were defined as dinucleotide, trinucleotide, tetranucleotide, pentanucleotide and hexanucleotide repeats with at least 18 bp in length.