Table 12.
Pathway analysis of the top 100 genes selected by RPCA on colon data
| rank | Go annotation | Q-value | Genes in network | Genes in genome |
|---|---|---|---|---|
| 1 | cytokine-mediated signalling pathway | 2.27E-20 | 21 | 215 |
| 2 | cellular response to cytokine stimulus | 1.70E-19 | 21 | 244 |
| 3 | response to cytokine stimulus | 2.62E-18 | 21 | 283 |
| 4 | type I interferon-mediated signalling pathway | 1.61E-17 | 14 | 71 |
| 5 | cellular response to type I interferon | 1.61E-17 | 14 | 71 |
| 6 | response to type I interferon | 1.67E-17 | 14 | 72 |
| 7 | interferon-gamma-mediated signalling pathway | 2.60E-08 | 9 | 77 |
| 8 | cellular response to interferon-gamma | 3.64E-08 | 9 | 81 |
| 9 | response to interferon-gamma | 1.04E-07 | 9 | 92 |
| 10 | response to other organism | 3.69E-05 | 10 | 243 |