Table 1.
Genome-wide significant* SNPs for antibody response to the Newcastle disease virus
| SNP ID | GGA | Position(bp) | Nearest gene | SNP | FA | FAW | FAR | FAS | Pvalue | R2 |
|---|---|---|---|---|---|---|---|---|---|---|
|
rs15354805 |
1 |
100399530 |
ROBO2 |
C/T |
C |
0.756 |
0.750 |
1.000 |
3.90×10-7 |
0.05 |
| rs15355555 | 1 | 100994585 | 243 Kb upstream of ROBO2 | A/G | G | 0.758 | 0.750 | 1.000 | 8.15×10-7 | 0.04 |
Note: ‘FA’=favorable allele with higher antibody response to the Newcastle disease virus, ‘FAW’= favorable allele frequency of the F2 population, ‘FAR’= favorable allele frequency of the fast-growing Chinese yellow broiler sire line, ‘FAS’= favorable allele frequency of the Huiyang beard chicken. *Significant at the 5% level by the Bonferroni correction.