Table 1.
Likelihood models | Statistical test | P-value | Estimate for ω >1 | Proportion of sites ω >1 | Codon sites ω >1 |
---|---|---|---|---|---|
M1a vs M2a |
18.212 |
0.00011 |
3.41529 |
0.20074 |
121,158,159 |
M7 vs M8 |
23.862 |
6.58E-06 |
3.02509 |
0.26839 |
121,158,159,161,163,164 |
M8a vs M8 | 15.922 | 3.30E-05 |
ω = (dN / dS) where dN represents the number of non synonymous substitutions and dS the number of synonymous substitutions. Numbers of codon sites refer to position in the reading frame.