Table 3. Prediction of novel miRNA and their precusors.
| Family | Length (nt) | ID | Sequence | Star (*) |
| rhy-miRC1 | 24 | R1 | AAGGGACUAGCAAAAGCUAAGUGU | Yes |
| 24 | R5 | AGGGACUAGCAAAAGCUAAGUGUG | ||
| 24 | S004 | AAGGGACUAGCAAAAGCUAAGUGU | ||
| 24 | S019 | AGGGACUAGCAAAAGCUAAGUGUG | ||
| rhy-miRC2 | 21 | R3 | AGGGAAAAGCAUAGGAAUGAG | Yes |
| 22 | R4 | AGGGAAAAGCAUAGGAAUGAGU | Yes | |
| rhy-miRC3 | 21 | R16 | UGGGAUGGGAAGAAUGGCACG | |
| 22 | R17 | UGGGAUGGGAAGAAUGGCACGA | ||
| 23 | R18 | UGGGAUGGGAAGAAUGGCACGAA | ||
| 22 | R8 | AUGGGAUGGGAAGAAUGGCACG | ||
| rhy-miRC4 | 21 | S007 | AAUUUGGUGAUCGUUAAGGCA | |
| 23 | S015 | AGCCAAUUUGAUGAUCGUUAAGGC | Yes | |
| 24 | S016 | AGCCAAUUUGGUGAUCGUUAAGGCA | Yes | |
| 22 | S027 | CAAUUUGGUGAUCGUUAAGGCA | ||
| 23 | S042 | GCCAAUUUGGUGAUCGUUAAGGCA | Yes | |
| rhy-miRC5 | 24 | S013 | AGAUGAUCUAUACACUAGUACCUA | |
| 24 | S014 | AGAUGAUCUAUACAUUAGUACCUA | Yes | |
| rhy-miRC6 | 20 | S017 | AGGCAGUCACCUUGGCUAAC | Yes |
| 21 | S018 | AGGCAGUCACCUUGGCUAACU | Yes | |
| 19 | S048 | GGCAGUCACCUUGGCUAAC | Yes | |
| rhy-miRC7 | 20 | S038 | CUCAAGAAAGCUGUGGGACA | Yes |
| 21 | S044 | GCUCAAGAAAGCUGUGGGACA | Yes | |
| rhy-miRC8 | 21 | S040 | GAAUGUCGUCUGGUUCGAAAU | Yes |
| 22 | S041 | GAAUGUCGUCUGGUUCGAAAUC | Yes | |
| rhy-miRC9 | 20 | S072 | UGACGAUGAGAGAGAGCACG | |
| 21 | S073 | UGACGAUGAGAGAGAGCACGC | ||
| 21 | S094 | UUGACGAUGAGAGAGAGCACG | ||
| rhy-miRC10 | 19 | S082 | UGUAUGUUCGUCUCCAACU | |
| 21 | S083 | UGUAUGUUCGUCUCCAACUCU | ||
| rhy-miRC11 | 24 | S026 | AUUUUCAGCCAAAUUGAUGAUCGU | |
| 21 | S085 | UUCAGCCAAAUUGAUGAUCGU | ||
| 21 | S097 | UUUCAGCCAAAUUGAUGAUCG | Yes | |
| rhy-miRC12 | 21 | S102 | UUUUCUGAUUGAGCCGUGCCA | Yes |
| 21 | S103 | UUUUUCUGAUUGAGCCGUGCC | Yes | |
| rhy-miRC13 | 21 | R2 | ACAUGGAACACUACGACAUGG | Yes |
| rhy-miRC14 | 21 | R6 | AGUGGGAGGGUCGGCAAAAAA | Yes |
| rhy-miRC15 | 24 | R7 | AUGAUUGUGGAUAGAUUAAGCAUG | |
| rhy-miRC16 | 21 | R10 | GAGAUGGAGAUGGAGAGCUAG | |
| rhy-miRC17 | 21 | R11 | GCAUUCCUAUGCUUUUUCUCCA | Yes |
| rhy-miRC18 | 21 | R15 | UGGAUGCUUUGGAUGGAACGG | Yes |
| rhy-miRC19 | 21 | S001 | AAAUUGAUGAUCGUUAAGGUA | |
| rhy-miRC20 | 24 | S002 | AAGCCAAAUUGGUGAUCGUUAAGG | |
| rhy-miRC21 | 21 | S005 | AAUAAAGCUGUGGGAAGAUAC | Yes |
| rhy-miRC22 | 24 | S006 | AAUAUUACUAUUUUGAGGACUCAU | |
| rhy-miRC23 | 24 | S008 | ACAGGCGGUGGAACAAAUAUGAAU | |
| rhy-miRC24 | 21 | S009 | ACCUAGCUCUGAUACCAUGUG | Yes |
| rhy-miRC25 | 22 | S010 | ACUCUCCCUCAAGGGCUUCUAG | |
| rhy-miRC26 | 21 | S012 | AGAAUCUUGAUGAUGCUGCAU | Yes |
| rhy-miRC27 | 21 | S020 | AGUGGAGUUCUGGGAAAGAAG | |
| rhy-miRC28 | 24 | S021 | AGUUGGGACAAUAUCGGUACAAUG | |
| rhy-miRC29 | 24 | S022 | AGUUUUAAGGGACUGUGAGGGACA | |
| rhy-miRC30 | 21 | S023 | AUCAUGCUAUCCCUUUGGAUU | Yes |
| rhy-miRC31 | 21 | S028 | CAGGUCGGGAACUGCUUCGGU | |
| rhy-miRC32 | 21 | S029 | CAUCAACGCUGCACCCAAUUA | Yes |
| rhy-miRC33 | 21 | S031 | CCCGCCUUGCAUCAACUGAAU | Yes |
| rhy-miRC34 | 21 | S032 | CGAGCCGAACCAAUAUCACUC | |
| rhy-miRC35 | 21 | S033 | CGCUAUCCAUCCUGGGUUUCC | Yes |
| rhy-miRC36 | 21 | S037 | CUAGUCAUUGGUCAUAGCAUC | |
| rhy-miRC37 | 21 | S043 | GCGUACGAGGAGCCAAGCAUA | Yes |
| rhy-miRC38 | 21 | S045 | GCUCUCUAUGCUUCUGUCAUC | Yes |
| rhy-miRC39 | 24 | S047 | GGAGUGUGGAUUGUAAAAUGGGGA | |
| rhy-miRC40 | 21 | S049 | GUUCAAUAAAGCUGUGGGAAG | Yes |
| rhy-miRC41 | 22 | S050 | UAUGUCGCAGGAGAGAUGGUAC | |
| rhy-miRC42 | 22 | S051 | UCAAUAAAGCUGUGGGAAGAUA | Yes |
| rhy-miRC43 | 22 | S056 | UCGCUUGGUGCAGGUCGGGAAC | Yes |
| rhy-miRC44 | 21 | S081 | UGGGAUUUGGCGAAUUGUGGU | Yes |
| rhy-miRC45 | 22 | S089 | UUCGGACCAGGCUUCAUUCCCC | Yes |
| rhy-miRC46 | 21 | S098 | UUUGAAGUGGGAUUUGGCGAA | |
| rhy-miRC47 | 24 | S101 | UUUGGCUGAAAUUUUGCAGAGAUG |
The rose floral transcriptome database, and the genome sequence of strawberry (F.vesca) and transcriptome data of rose were used as reference, respectively. R, roses; S, strawberry.