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. 2013 May 16;8(5):e64290. doi: 10.1371/journal.pone.0064290

Table 5. Predicted new targets for known miRNAs in rose.

miRNA family Targets ID Targets Annotation
miR156 RU23956 E3 ubiquitin protein ligase UPL1, putative
miR156 RU41939 Nucleic acid binding protein, putative
miR156 RU54762 Protein kinase
miR156 RU20461 Timing of CAB expression 1 protein
miR156/miR157 RU20216 Guanine nucleotide-exchange-like protein
miR156/miR157 RU06764 RING/U-box domain-containing protein
miR159 RU24195 Cytokinin dehydrogenase
miR159 RU48935 ATP-binding region, ATPase-like domain-containing protein
miR159 RU17672 Glycosyl transferase family 17 protein
miR166 RU06269 beta-galactosidase
miR166 RU10736 Kinesin-like protein
miR166 RU03738 Pectin methylesterase 1
miR166 RU14941 Rosa rugosa Rdr1 homologous region genomic sequence
miR168 RU60766 U-box domain-containing protein 43-like
miR169 RU34168 CCAAT-binding transcription factor subunit B
miR169 RU00770 Rosa multiflora breeding line 88/124–46 black spot resistance muRdr1 gene locus
miR169 RU09780 Nucleotide binding
miR171 RU44711 Ubiquitin-protein ligase
miR172 RU24707 Peptidyl-prolyl cis-trans isomerase
miR172 RU60452 Zinc finger, C2H2-type
miR394 RU05839 Dehydration-responsive protein-related
miR394 RU21813 E3 ubiquitin-protein ligase
miR394 RU54433 Rosa rugosa Rdr1 homologous region genomic sequence
miR394 RU17225 Zinc finger (C3HC4-type RING finger)
miR397 RU01636 Putative RING-H2 finger protein RHF2a [Arabidopsis thaliana]
miR398 RU47741 Receptor protein kinase-like protein
miR399 RU52206 Rosa multiflora breeding line 88/124–46 black spot resistance muRdr1 gene locus
miR482 RU12701 NBS-LRR type resistance protein
miR2109 RU60115 Rosa rugosa Rdr1 homologous region genomic sequence
miR2109 RU27536 TIR-NBS type disease resistance protein
miR4414 RU22051 Putative cyclic nucleotide-gated cation channel
miR4414 RU44477 SGS3 (SUPPRESSOR OF GENE SILENCING 3)
miR473 RU33494 Putative methyltransferase
miR5072 RU23976 Putative auxin influx carrier protein
miR5077 RU25746 ARF GTPase activator
miR5139 RU22365 Expansin
miR5139 RU05060 Zinc finger, C3HC4 type