Table 7. Polymorphisms detected in testis samples.

Refseq ID	Gene name	SSC	Position	dbSNP	Reference	Alternate	Quality	RMSPSa	SNP Classification	Sample group
XM_003124689	HBA2	3	35253219	0	G	GA	333.66	39.10	Insertion	High and Low
XM_003124689	HBA2	3	35253521	0	G	GCTC	617.84	39.89	Insertion	High and Low
NM_213817	IRG6*	3	118838598	0	G	A	181.62	37.00	Synonymous	Low androstenone
XM_003124870	LOC100516362	3	48107044	0	G	GT	260.38	38.59	Insertion	High androstenone
XM_001928325	CD244	4	93149337	0	T	A	84.61	36.72	Synonymous	High androstenone
XM_003128168	DSP	7	4940734	0	G	A	31.18	37.00	Synonymous	Low androstenone
XM_003128168	DSP*	7	4944881	0	C	T	69.47	37.00	Synonymous	Low androstenone
XM_001928679	ARG2	7	99786827	0	A	AT	106.28	39.51	Insertion	High androstenone
NM_214061	MX1	13	144402807	0	A	G	43.93	37.40	Non- synonymous	High androstenone
NM_214061	MX1*	13	144420441	0	C	T	59.51	37.00	Non- synonymous	Low androstenone
XM_001928671	IFIT2*	14	106102335	rs80925743	G	T	98.81	37.00	Synonymous	Low androstenone
XM_001928671	IFIT2	14	106102694	0	G	A	40.63	37.00	Synonymous	Low androstenone

^*the SNP validated in boar population using RFLP (see Table 9).

^aRoot mean square phred score.