Table 2. Nucleotide diversity and summary statistics for the 11 loci used to estimate long-range LD and structure in populations of P. abies.
| Gene | N | Length of Amplicon, bp | Bp Sequenced | S (Singletons) | H | Hd | θw | π | Tajima’s D |
|---|---|---|---|---|---|---|---|---|---|
| PaAP2L3 | 74 | 4681 | 457 | 5 (1) | 7 | 0.58 | 2.2 | 1.8 | −0.42 |
| PaCDF1 | 107 | 1585 | 1028 | 23 (4) | 22 | 0.92 | 4.3 | 2.9 | −0.94 |
| PaCOL1 | 81 | 2970 | 2449 | 64 (26) | 39 | 0.97 | 5.3 | 3.3 | −1.22 |
| PaMFT1 | 96 | 4328 | 1597 | 62 (34) | 54 | 0.95 | 7.6 | 3.3 | −1.81a |
| PaFTL1 | 109 | 2742 | 748 | 14 (4) | 14 | 0.82 | 3.6 | 3.3 | −0.18 |
| PaCCA1 | 88 | 4126 | 742 | 24 (5) | 21 | 0.90 | 6.4 | 4.1 | −1.1 |
| PaPRR7 | 93 | 7271 | 1796 | 31 (21) | 23 | 0.88 | 3.4 | 1.6 | −1.65 |
| PaPRR1 | 114 | 1859 | 986 | 25 (8) | 20 | 0.89 | 4.8 | 4.8 | 0.02 |
| PaWS02746 | 97 | 4411 | 470 | 34 (13) | 40 | 0.96 | 14.1 | 12 | −0.43 |
| PaWS02749 | 100 | 3189 | 605 | 53 (20) | 23 | 0.82 | 16.9 | 10.5 | −1.21 |
| PaZIP | 113 | 4107 | 803 | 21 (6) | 15 | 0.74 | 4.9 | 3.6 | −0.78 |
LD, linkage disequilibrium; N, Sample size; S, Number of segregating sites; H, Number of observed haplotypes; Hd, Observed haplotype diversity; θw, Watterson’s estimate of θ (×10-03); π, Average nucleotide diversity (×10-03).
a
Significant deviation from the standard neutral model.