Table 5. Mean linkage disequilibrium and recombination rate parameters estimated per locus for each of the three populations SE-61, SE-64, and FI-67.

		Number of Sites			r2
Gene	Pop		Informative	Pairwisea	Sign. Pairwise, %a	Mean	<0.2b	ρ	ρ/site	ρ/θ
PaAP2L3	SE-61		3	3	0	−0.16	n.a.	2.04	0.4	1.35
	SE-64		4	6	0	−0.69	n.a.	10.2	2.2	6.25
	FI-67		7	21	9.5	0.32	n.a.	2.04	0.4	0.97
PaCDF1	SE-61		8	28	3.6	0.14	n.a.	6.12	3.9	1.45
	SE-64		9	36	8.3	0.25	n.a.	0	0	0
	FI-67		8	28	0	0.15	n.a.	13.3	8.4	3.14
PaCOL1	SE-61		25	300	0	0.16	n.a.	23.5	7.9	2.08
	SE-64		15	105	0	0.29	n.a.	12.2	4.1	1.3
	FI-67		19	171	0	0.37	n.a.	4.08	1.4	0.52
PaMFT1	SE-61		11	55	10.9	0.25	n.a.	20.4	4.7	2.72
	SE-64		10	45	13.3	0.37	n.a.	2.04	0.5	0.28
	FI-67		8	28	21.4	0.44	n.a.	3.06	0.7	0.65
PaFTL1	SE-61		7	21	9.5	0.29	n.a.	7.14	2.6	3.17
	SE-64		7	21	4.8	0.2	n.a.	2.04	0.7	0.65
	FI-67		8	28	14.3	0.34	n.a.	8.16	3	1.97
PaCCA1-l	SE-61		10	45	2.2	0.19	n.a.	7.14	1.7	1.58
	SE-64		8	28	0	0.2	n.a.	0	0	0
	FI-67		6	15	0	0.29	n.a.	0	0	0
PaPRR7	SE-61		9	36	5.6	0.22	n.a.	3.06	0.4	0.58
	SE-64		7	21	9.5	0.2	n.a.	3.06	0.4	0.71
	FI-67		11	55	1.8	0.16	n.a.	5.1	0.7	0.73
PaPRR1	SE-61		11	55	12.7	0.29	n.a.	2.04	1.1	0.35
	SE-64		11	55	23.6	0.52	n.a.	0	0	0
	FI-67		12	66	16.7	0.37	n.a.	2.04	1.1	0.46
PaWS02746	SE-61		14	91	17.6	0.38	n.a.	8.16	1.9	1.08
	SE-64		12	66	6.1	0.32	n.a.	18.4	4.2	3.14
	FI-67		16	120	23.3	0.5	n.a.	12.2	2.8	1.37
PaWS02749	SE-61		14	91	11	0.39	n.a.	3.06	1	0.38
	SE-64		15	105	0	0.37	n.a.	2.04	0.6	0.23
	FI-67		11	55	29.1	0.55	n.a.	7.14	2.2	0.85
PaZIP	SE-61		11	55	40	0.54	n.a.	0	0	0
	SE-64		9	36	58.3	0.55	n.a.	0	0	0
	FI-67		9	36	44.4	0.66	n.a.	0	0	0
Mean	SE-61		123	780	8.6	0.261	705	7.5	2.3	1.34
	SE-64		107	524	9.5	0.348	2549	4.5	1.2	0.88
	FI-67		115	623	13.5	0.398	4580	5.2	1.9	0.94

n.a., not applicable.

^aNumber of pairwise comparisons and the fraction of these that are significant.

^bNumber of base pairs where estimated r2 falls below 0.2.