Table 1.
SNPs with genome-wide significant associations with NCP4 on BTA12
| BTA | SNP-id | Position (bp)_UMD3.1 | Allele in upper extreme | Minor allele frequency in upper extreme | Minor allele frequency in lower extreme | Allele in lower extreme | Odds ratio | P-value |
|---|---|---|---|---|---|---|---|---|
| 12 |
ARS-BFGL-NGS-94479 |
15405850 |
A |
0.3599 |
0.2523 |
G |
1.667 |
8.401E-06 |
| 12 |
Hapmap39990-BTA-31570 |
15441597 |
A |
0.3697 |
0.2628 |
C |
1.645 |
9.787E-06 |
| 12 | Hapmap36290-SCAFFOLD191599_16698 | 15462779 | A | 0.3697 | 0.2628 | G | 1.645 | 9.787E-06 |
SNPs positions are based on the UMD3.1 assembly of the bovine genome.
The upper extremes and lower extremes correspond to NCP4 values above the 93.3rd percentile and below the 6.68th percentile, respectively.