Table 6. QTLs detected on ‘Olivière’בArbequina’ integrated map.
| BLUP | Linkage Group | LODa | Var (%)b | Allelic effectc | Af c | Am c | Dc | Cofactord |
| Tree Scale | ||||||||
| Yield | OA12 | 4.35 (2,5) | 15.1 | Am | −0,7267 | 4,8602 | −0,8794 | Zit053 |
| Yield_08 | OA2 | 3.33 (3.4) | 13.6 | Af | −3,0397 | 1,1436 | 1,1755 | *ACG/CAC-59 |
| OA6 | 2.39 (2.4) | 9.6 | Af;D | 2,6439 | −0,3025 | −1,4886 | Zit482 | |
| Yield_09 | OA3 | 3,80 (3,0) | 16.8 | Af; Am | 3,4688 | 1,1943 | 0,3547 | Zit324 |
| Yield_10 | OA4 | 5.14 (3,1) | 13.4 | Af; D; Am | 2,4808 | −2,5112 | −1,8372 | *ACT/CAT-78 |
| OA9 | 3.45 (2,8) | 11.1 | D | 0,6723 | −0,7503 | −3,1309 | *AGA/CTG-117 | |
| OA3 | 3.37 (2,9) | 10.8 | Am; D | −0,9899 | 2,9788 | 1,2178 | DCA3 | |
| Yield_11 | OA25 | 4.50 (2,8) | 20.2 | Af; D; Am | −5,284 | 4,008 | −2,909 | Zit388 |
| GU Scale | ||||||||
| Inflo_tot | OA25 | 3,45 (2,6) | 11.6 | Am | 0,0039 | −0,0402 | 0,0156 | Zit342 |
| Inflotot_09 | OA25 | 4.00 (2,8) | 14.7 | D | 0,0370 | −0,0324 | 0,1217 | Zit342 |
| OA3 | 3.27 (3,0) | 12.1 | Am | 0,0335 | 0,1062 | 0,0231 | Zit324 | |
| Inflotot_10 | OA13 | 4.11 (3,4) | 16.6 | Am | −0,0243 | 0,1241 | 0,0169 | Zit376 |
| Inflotot_11 | OA1 | 6.26 (3,3) | 18.0 | Am; D | −0,0045 | −0,0605 | 0,0570 | *AGA/CAA_142 |
| OA7 | 5.06 (2,3) | 14.3 | Af; Am | 0,0500 | −0,0457 | −0,0226 | *ACT/CTT_197 | |
| Inflo_direct | OA8 | 3,33 (3,0) | 12,1 | Am | 0,0707 | 0,1156 | 0,0488 | *ACT/CAC_142 |
| Inflodirect_09 | OA16 | 4.01 (3,2) | 15 | Af | −0,1519 | −0,0556 | 0,0482 | *ACG/CTC-128 |
| Inflodirect_10 | OA3 | 3.70 (2,9) | 13.9 | Af; Am | −0,0782 | −0,0827 | 0,0421 | *ACA/CAA-376 |
| OA9 | 3.47 (2,7) | 9.5 | Af; D | −0,0694 | 0,0097 | −0,0609 | *AGA/CTG-117 | |
| OA2 | 3.46 (3,2) | 13.0 | Af; D; Am | −0,0446 | −0,0651 | −0,0784 | *ACA/CAT-152 | |
| Inflodirect_11 | OA1 | 4.47 (3,3) | 15.0 | Am; D | 0,0151 | −0,0471 | 0,0750 | *AGA/CAA_142 |
| OA9 | 3.64 (2,7) | 12.0 | Af | 0,0800 | −0,0139 | −0,0223 | *AGA/CTC-83 | |
| OA16 | 3.03 (3,0) | 9.8 | Af | 0,0652 | −0,0074 | 0,0151 | *ACG/CTT-326 | |
| Fruit_direct | OA20 | 3.12 (2,8) | 13.1 | Af; Am | 0,1186 | 0,2819 | −0,0169 | *AGA/CTT_143 |
| Fruitset_AS | OA2 | 4.90 (3.3) | 15.3 | Af; D | −0,2623 | 0,1104 | −0,1618 | *ACA/CTG-50 |
| Inflo_M_09 | OA2 | 3.48 (3,4) | 13.2 | Af; Am | 0,2260 | −0,1695 | −0,0955 | Zit105 |
| Inflo_M_10 | OA3 | 3.46 (2,9) | 11.1 | Am | −0,0084 | −0,1079 | 0,0145 | Zit324 |
| Inflo_M_11 | OA20 | 3.71 (3,0) | 13.3 | Am | 0,0360 | 0,0698 | 0,0342 | *ACA/CTG_330 |
| OA7 | 3.47 (2,3) | 12.4 | Af; D; Am | 0,0366 | −0,0387 | −0,0519 | Zit447 | |
| Inflo_S | OA8 | 5.57 (2,9) | 19.1 | Af; D | −0,0082 | 0,0013 | 0,0225 | Zit394 |
| OA10 | 4.19 (3,0) | 14.1 | Af | 0,0202 | 0,0009 | −0,0025 | Zit402 | |
| OA9 | 2.64 (2.6) | 8.4 | Af; D | −0,0088 | 0,0019 | 0,0140 | *AGA/CTG-117 | |
| Inflo_S_09 | OA20 | 4.61 (2,9) | 12.9 | Af; D | −0,1697 | −0,0416 | −0,1447 | Zit417 |
| OA11 | 3.08 (3.0) | 8.3 | D | 0,1014 | 0,0961 | 0,1415 | Zit309 | |
| OA21 | 3.08 (3,1) | 8.3 | Am; D | −0,0122 | −0,1788 | −0,0891 | IAS_oli_11 | |
| Inflo_S_11 | OA7 | 3.35 (2,4) | 10.1 | Am | 0,0335 | −0,1024 | −0,0333 | Zit447 |
Maximum LOD score value with the considered threshold in parentheses: Bold LOD score values are significant at genome wide threshold.
Percentage of phenotypic variation explained by the QTL.
Allelic effects were estimated as Af = [(µac+µad) − (µbc+µbd)]/4 for female additivity; Am = [(µac+µbc)− (µad+µbd)]/4 for male additivity and D = [(µac+µbd) − (µad+µbc)]/4 for dominance where µac, µad, µbc and µbd are estimated phenotypic means associated to each of the 4 possible genotypic classes ac, bc, ad and bd, deriving for an ab×cd cross.
markers used as cofactors in the MQM analysis: Bold cofactors are mapped on ‘Arbequina’ genetic map (male parent); Non Bold cofactors are mapped on ‘Olivière’ genetic map (female parent) and Italic cofactors are mapped on both parental maps.