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. 2013 Apr 29;110(20):8081–8086. doi: 10.1073/pnas.1305378110

Table 1.

Determination of binding kinetics

ID Kd, µM kon, s−1⋅µM−1 koff, s−1 Residence time, min PDB ID Contact atoms Quotient*
Compounds with a short residence time for CDK8/CycC
 6 n.a. n.a. b.d. < 1.4
 7 3.24 a.d. a.d. b.d. < 1.4 4F6S 29 <1.4
 8 1.57 a.d. a.d. b.d. < 1.4
 3 5.82 a.d. a.d. b.d. < 1.4 4F7J 30 <1.4
 4 1.82 a.d. a.d. b.d. < 1.4 4F70 32 <1.4
 9 3.53 a.d. a.d. b.d. < 1.4
Compounds with a detectable or long residence time for CDK8/CycC
 10 1.30 1.85 × 10−3 2.41 × 10−3 7
 5 0.70 1.68 × 10−3 1.18 × 10−3 14 4F6U 47 0.3
 11 0.08 3.65 × 10−3 2.90 × 10−4 57 4F7N 37 1.5
 2 0.01 5.73 × 10−4 8.57 × 10−6 1,944 4F7L 43 45.2
 1 0.03 2.99 × 10−4 1.02 × 10−5 1,626 4F6W 58 28

a.d., above detection limit; b.d. below detection limit; ID, compound-identity; n.a., not applicable.

*

Quotient was calculated by dividing the residence by the contact atoms.