Table 2.
Cluster analysis of all small RNA libraries compared between two conditions
| Libraries compared | Total clustersa | No. of genes associated | RTNsb | TNsc | Inverted repeats | Tandem repeats | Other repeats | Intergenic regions |
|---|---|---|---|---|---|---|---|---|
| Mycelial libraries |
|
|
|
|
|
|
|
|
| CM vs CS |
4 |
2 |
0 |
0 |
0 |
0 |
0 |
2 |
| CM vs MM |
37 |
12 |
1 |
0 |
0 |
0 |
0 |
24 |
| CS vs MM |
31 |
6 |
0 |
0 |
2 |
0 |
0 |
23 |
| NS vs CM |
154 |
52 |
4 |
1 |
3 |
2 |
0 |
96 |
| CM vs PQ |
251 |
179 |
2 |
0 |
1 |
3 |
1 |
69 |
| Infected Rice leaf libraries |
|
|
|
|
|
|
|
|
| LMg0 vs 72 |
281 |
247 |
0 |
0 |
0 |
1 |
3 |
38 |
| LMg0 vs 96 |
232 |
192 |
2 |
0 |
0 |
2 |
3 |
39 |
| LMg72 vs 96 | 188 | 164 | 0 | 0 | 0 | 2 | 2 | 29 |
a Several of these clusters associate with more than one genomic element.
b Retrotransposons.
c Transposons.