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. 2013 Feb 18;4:7. doi: 10.1186/2041-1480-4-7

Table 1.

Application web-based workflows [28]

Web service name Type Language Components Annotations
Oscar Maximum
Chemical
English
OscarTokenizer,
chemical expression,
Entropy Markov
NER
 
OscarMER
chemical adjective,
Model (OscarMeMM)
 
 
 
ontology term, chemical
 
 
 
 
compound reaction
NeMINE
Biomedical
English
Sentence Segmentation,
gene, protein
 
NER
 
NeMINE
 
A Biomedical Named
Biomedical
English
Sentence Segmentation,
protein, DNA, RNA,
Entity Recognizer
NER
 
ABNER-NLBPA
Cell line, Cell type
(ABNER)
 
 
 
 
GENIA POS tagger
POS tagger,
English
Sentence Segmentation,
protein, DNA, RNA,
 
Biomedical
 
GENIA Tagger
Cell line, Cell type,
 
NER
 
 
Token, Chunk
 
 
English
Sentence Segmentation,
protein,
Disease Extraction
 
 
GENIA tagger,
DNA, RNA,
with Concept
Biomedical
 
Morphological analysis,
Cell line,
Association (DECA)
NER
 
SpeciesTagger
Cell type,
 
 
 
(NCBI Taxonomy),
Species,
 
 
 
Extract Abbreviation,
SpeciesNormalizedEntity
 
 
 
Species Disambiguation
 
Yeast Metabliner
Biomedical
English
Yeast Metabliner
Metabolites
 
NER
 
 
 
OrgHub
Biomedical
English
Extract Features super-
Organisms,
 
NER
 
vised CRF classifier
Habitats
Apertium
POS tagger
English,
Morphological analysis,
Morphological
 
 
Spanish,
POS tagging
annotations,
 
 
Portuguese,
 
POS tags
 
Catalan
 
 
 
LX-Chunker
Chunker
Portuguese
LX-Chunker
Paragraphs,
 
 
 
 
Sentences
LX-Tokenizer
Tokenizer
Portuguese
LX-Chunker
Paragraphs
 
 
 
LX-Tokenizer
Sentences
 
 
 
 
Tokens
NIITranslator
Statistical
English,
n-ii Translator
Translated text
 
Machine
Spanish
 
 
 
Translator
 
 
 
UAICTokenizer
Tokenizer
Independent
UAICTokenizer
Tokens
UAICLemmatizer
Lemmatizer
Romanian
UAICTokenizer
Tokens
 
 
 
UAICLemmatizer
Lemmas
MLRSSentence-
Sentence
Independent,
MLRSSentenceSplitter
Sentences
Splitter
Splitter
tuned for
 
 
    Maltese