Table 2. Genotype and allele frequencies for rs17277986, rs6584777, rs12251340, rs10884402, rs7078098 and rs950809 SNPs and three genetic modes of inheritance for the five studied polymorphisms in SORCS1 gene.
SNP ID | Group | n | Genotype frequency (%) | P-value | MAF | P-value | Models | OR; 95% CI; Pa | ||
CC | CT | TT | T | Additive | 0.93(0.64,1.36),0.71 | |||||
rs17277986 | AD | 236 | 173(73.3) | 60(25.4) | 3(1.3) | 0.922 | 0.14 | 0.719 | Dominant | 0.92(0.6,1.38),0.69 |
Control | 233 | 167(71.7) | 63(27) | 3(1.3) | 0.15 | Recessive | 0.99(0.2,4.94),0.99 | |||
CC | CT | TT | T | Additive | 0.97(0.66,1.41),0.86 | |||||
rs6584777 | AD | 236 | 173(73.3) | 60(25.4) | 3(1.3) | 0.974 | 0.14 | 0.863 | Dominant | 0.96(0.64,1.45),0.85 |
Control | 233 | 169(72.5) | 61(26.2) | 3(1.3) | 0.14 | Recessive | 0.99(0.2,4.94),0.99 | |||
GG | GT | TT | T | Additive | NA | |||||
rs12251340 | AD | 236 | 236(100) | 0(0) | 0(0) | NA | 0 | NA | Dominant | NA |
Control | 233 | 233(100) | 0(0) | 0(0) | 0 | Recessive | NA | |||
GG | GA | AA | A | Additive | 0.63(0.49,0.82),<0.001 | |||||
rs10884402 | AD | 236 | 102(43.2) | 112(47.5) | 22(9.3) | 0.0001 | 0.33 | 0.0004 | Dominant | 0.7(0.48,1.02),0.06 |
Control | 233 | 81(34.8) | 97(41.6) | 55(23.6) | 0.44 | Recessive | 0.33(0.2,0.57),<0.001 | |||
TT | TC | CC | C | Additive | 1.2 (0.91,1.58),0.208 | |||||
rs7078098 | AD | 236 | 117(49.6) | 101(42.9) | 18(7.6) | 0.325 | 0.29 | 0.207 | Dominant | 1.16 (0.81,1.66),0.428 |
Control | 233 | 107(45.9) | 99(42.5) | 27(11.6) | 0.33 | Recessive | 1.59 (0.85,2.97),0.148 | |||
CC | CT | TT | T | Additive | 1.04(0.79,1.36),0.79 | |||||
rs950809 | AD | 236 | 87(36.9) | 126(53.4) | 23(9.7) | 0.036 | 0.36 | 0.79 | Dominant | 1.31(0.9,1.9),0.15 |
Control | 233 | 101(43.3) | 98(42.1) | 34(14.6) | 0.36 | Recessive | 0.63(0.36,1.11),0.11 |
Abbreviations: OR, odds ratio; 95% CI, 95% confidence interval; MAF, minor allele frequency; NA, not available.
Genotypes and alleles are expressed as number (percentage). P values were calculated by χ2 test 3×2 contingency table for genotype distribution and 2×2 contingency table for allele distribution.
Adjusting for age and gender.