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. 2013 May 20;8(5):e63621. doi: 10.1371/journal.pone.0063621

Table 2. Genotype and allele frequencies for rs17277986, rs6584777, rs12251340, rs10884402, rs7078098 and rs950809 SNPs and three genetic modes of inheritance for the five studied polymorphisms in SORCS1 gene.

SNP ID Group n Genotype frequency (%) P-value MAF P-value Models OR; 95% CI; Pa
CC CT TT T Additive 0.93(0.64,1.36),0.71
rs17277986 AD 236 173(73.3) 60(25.4) 3(1.3) 0.922 0.14 0.719 Dominant 0.92(0.6,1.38),0.69
Control 233 167(71.7) 63(27) 3(1.3) 0.15 Recessive 0.99(0.2,4.94),0.99
CC CT TT T Additive 0.97(0.66,1.41),0.86
rs6584777 AD 236 173(73.3) 60(25.4) 3(1.3) 0.974 0.14 0.863 Dominant 0.96(0.64,1.45),0.85
Control 233 169(72.5) 61(26.2) 3(1.3) 0.14 Recessive 0.99(0.2,4.94),0.99
GG GT TT T Additive NA
rs12251340 AD 236 236(100) 0(0) 0(0) NA 0 NA Dominant NA
Control 233 233(100) 0(0) 0(0) 0 Recessive NA
GG GA AA A Additive 0.63(0.49,0.82),<0.001
rs10884402 AD 236 102(43.2) 112(47.5) 22(9.3) 0.0001 0.33 0.0004 Dominant 0.7(0.48,1.02),0.06
Control 233 81(34.8) 97(41.6) 55(23.6) 0.44 Recessive 0.33(0.2,0.57),<0.001
TT TC CC C Additive 1.2 (0.91,1.58),0.208
rs7078098 AD 236 117(49.6) 101(42.9) 18(7.6) 0.325 0.29 0.207 Dominant 1.16 (0.81,1.66),0.428
Control 233 107(45.9) 99(42.5) 27(11.6) 0.33 Recessive 1.59 (0.85,2.97),0.148
CC CT TT T Additive 1.04(0.79,1.36),0.79
rs950809 AD 236 87(36.9) 126(53.4) 23(9.7) 0.036 0.36 0.79 Dominant 1.31(0.9,1.9),0.15
Control 233 101(43.3) 98(42.1) 34(14.6) 0.36 Recessive 0.63(0.36,1.11),0.11

Abbreviations: OR, odds ratio; 95% CI, 95% confidence interval; MAF, minor allele frequency; NA, not available.

Genotypes and alleles are expressed as number (percentage). P values were calculated by χ2 test 3×2 contingency table for genotype distribution and 2×2 contingency table for allele distribution.

a

Adjusting for age and gender.