Table 1:
Software name | Uses intact mass to find possible glycopeptide compositions | Uses protein sequence | Uses biological glycosite filter | Incorporates allelic variation | Does not require previous knowledge of glycans | Does not require peptide mass input | Uses tandem data | Uses retention time |
---|---|---|---|---|---|---|---|---|
Branch-and-Bound | ✗ | ✗ | ✗ | ✗ | ✓ | ✓ | ✓ | ✗ |
GlycoMaster | ✗ | ✗ | ✗ | ✗ | ✓ | ✗ | ✓ | ✗ |
GlycoMiner | ✓ | ✓ | ✓ | ✗ | ✓ | ✓ | ✓ | ✗ |
GlycoMod | ✓ | ✓ | ✓ | ✗ | ✓ | ✗ | ✗ | ✗ |
Glycopeakfinder | ✓ | ✗ | ✗ | ✗ | ✓ | ✗ | ✓ | ✗ |
GlycoPep DB | ✓ | ✓ | ✓ | ✗ | ✓ | ✗ | ✗ | ✗ |
GlycoPep grader | ✓ | ✓ | ✗ | ✗ | ✗ | ✗ | ✓ | ✗ |
GlycoPep ID | ✗ | ✓ | ✗ | ✗ | ✗ | ✗ | ✓ | ✗ |
GlycoSpectrumScan | ✓ | ✗ | ✗ | ✗ | ✗ | ✗ | ✗ | ✗ |
GlycoX | ✓ | ✓ | ✗ | ✗ | ✓ | ✗ | ✗ | ✗ |
GlyDB | ✓ | ✓ | ✓ | ✗ | ✓ | ✗ | ✓ | ✗ |
GlyPID | ✓ | ✗ | unclear | ✗ | ✓ | ✓ | ✓ | ✗ |
GP finder | ✓ | ✓ | ✓ | ✗ | ✓ | ✓ | ✓ | ✗ |
Medicel N-glycopeptide library | ✓ | ✓ | ✓ | ✗ | ✓ | ✓ | ✓ | ✗ |
Peptoonist | ✓ | ✓ | ✓ | ✗ | ✓ | ✓ | ✓ | ✗ |
Sweet substitute | ✗ | ✗ | ✗ | ✗ | ✓ | ✓ | ✓ | ✗ |
Ideal software | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |