Table 2:
Table of glycopeptide analysis software versus data handling abilities
| Software name | Performs internal deconvolution and deisotoping | Compatible with a variety of data input types | Handles data in batch |
|---|---|---|---|
| Branch-and-Bound | ✗ | Unclear | ✗ |
| GlycoMaster | ✗ | Mass/intensity text files only | ✗ |
| GlycoMiner | ✗ | Input as ProteinLynx xml project (Waters), or spectra in ASCII peak list format (PKL-available on most instruments) | ✓ |
| GlycoMod | ✗ | Mass/intensity text files only | ✗ |
| Glycopeakfinder | ✗ | Mass/intensity text files only | ✗ |
| GlycoPep DB | ✗ | Mass/intensity text files only | ✗ |
| GlycoPep grader | ✗ | Mass/intensity text files only | ✗ |
| GlycoPep ID | ✗ | Mass/intensity text files only | ✗ |
| GlycoSpectrumScan | ✗ | Mass/intensity text files only | ✗ |
| GlycoX | ✗ | Mass/intensity text files only | ✗ |
| GlyDB | ✓ | Unclear | ✓ |
| GlyPID | ✓ | Unclear | Unclear |
| GP finder | ✗ | Mass/intensity/rt text files only | ✗ |
| Medicel N-glycopeptide library | ✗ | Micromass Ltd. pkl file format only | ✓ |
| Peptoonist | ✓ | ✓ | ✓ |
| Sweet substitute | ✗ | Mass/intensity text files only | ✗ |
| Ideal Software | ✓ | ✓ | ✓ |