Table 3:
Software name | Solves peptide, glycan and glycosite of N- and O-linked glycopeptides | Solves glycopeptides from single protein, protein cocktails and complex biosystems | Determines glycan structure | Provides match score | Calculates false positive and false negative rate |
---|---|---|---|---|---|
Branch-and-Bound | ✗ | ✓ | ✓ (in some cases | ✓ | ✗ |
GlycoMaster | ✗ | ✗ | ✓ | ✓ | ✗ |
GlycoMiner | ✗ | ✗ | ✗ | ✓ | ✓ |
GlycoMod | ✗ | ✗ | ✗ | ✗ | ✗ |
Glycopeakfinder | ✓ | ✗ | ✗ | ✗ | ✗ |
GlycoPep DB | ✗ | ✗ | ✗ | ✗ | ✗ |
GlycoPep Grader | ✗ | ✗ | ✗ | ✓ | ✗ |
GlycoPep ID | ✗ | ✗ | ✗ | ✗ | ✗ |
GlycoSpectrumScan | ✓ | ✗ | ✗ | ✗ | ✗ |
GlycoX | ✓ | ✗ | ✗ | ✗ | ✗ |
GlyDB | ✗ | ✗ | ✓ (for simple biantennary glycans) | ✓ | ✗ |
GlyPID | ✗ | ✗ | ✗ | ✓ | ✗ |
GP finder | ✓ | ✓ (for pronase digested glycopeptides) | ✗ | ✓ | ✗ |
Medicel N-glycopeptide library | ✗ | ✓ | ✗ | ✓ | ✗ |
Peptoonist | ✗ | ✗ | ✗ | ✓ | ✗ |
Sweet substitute | ✗ | ✗ | ✓ (in some cases) | ✗ | ✗ |
Ideal software | ✓ | ✓ | ✓ | ✓ | ✓ |