Table 1.

Identified homology based conserved miRNA in Panax ginseng

miRNA family	Sequence	Length of mature miRNA	Reference	Precursor EST	Length of precursor	Location (3’|5’)	GC%	MFE (kcal/mol)	MFEI
miR156a	TTTACGGAAGATTGAGAGGAC	21	bna	contig45577	60	3’	46.67	30	0.64
miR159a	AUAGCAGUGAAGGCAGCUCCU	21	osa	contig47841	94	3’	44.68	31.91	0.71
miR164	UGGAGAAUCAAGGCCCUUGAG	21	osa	contig50068	248	3’	41.53	33.06	0.8
miR169h	GAACUGAAGAUGACUUGACGG	21	mtr	contig14564	133	5’	29.32	20.53	0.7
miR172f	GUAAUCAUGAUCAUGCUGCU	20	sbi	contig47560	287	3’	42.51	33.59	0.79
miR319b	UUGGAGUGAAGGAAACUCCA	20	mtr	contig41016	72	5’	36.11	34.03	0.94
miR319e	UUGGAGUGAAGGAAACUCCAU	21	vvi	contig41016	72	5’	36.11	34.03	0.94
miR319f	UAGCAGUGAAGGCAGCUCCU	20	ptc	contig47841	94	3’	44.68	31.91	0.71
miR319g	UAGGACUGGAGGCAGCUUCU	20	ptc	contig54185	55	3’	54.55	49.45	0.91
miR319h	UUAGGACUGGAGGCAGCUUCU	21	vvi	contig54185	55	3’	54.55	49.45	0.91
miR396b	UUCCACAUCUAUCUUUAUCU	20	vvi	contig23595	366	5’	33.61	25.05	0.75
miR396c	UUCCUCGCCUUUCUUGCUCUU	21	ptc	contig58969	263	5’	55.51	39.35	0.71
miR397	UCAUUGAGCACAAUGUUGUUG	21	zma	contig39102	88	5’	39.77	31.82	0.8
miR408a	AUGCACUGCCUCUUCCCUGGC	21	ath	contig30298	102	3’	51.96	45.5	0.85
miR414d	UCAUCAUCAUCAUCAUCAUCA	21	ath	contig45947	60	3’	45	25.7	0.95
miR414e	UCAUCAUCAUCAUCAUCAUCA	21	ath	contig45947	60	3’	45	42.83	0.95
miR414f	UCAUCAUCAUCAUCAUCAUCA	21	osa	contig46717	328	5’	47.87	32.99	0.69
miR414h	UCAUCAUCAUCAUCAUCGAAU	21	osa	contig27681	229	5’	41.92	32.97	0.79
miR414i	UCAUGGGCAUCAUCAUGGUCA	21	ath	contig54204	85	3’	44.71	35.65	0.8
miR414j	UCGAAUUCAUCAUCAUCAUCA	21	ath	contig27681	241	5’	41.49	34.44	0.83
miR414l	UCUUCGUCAUCUUCAUCUUCC	21	osa	contig55217	118	5’	47.46	38.39	0.81
miR417	GAACAAAAUGAAUUUGUUCGA	21	ath	contig47470	60	5’	28.33	37	1.31
miR419e	UUAUUGAUGAUGAGGAUGAUG	21	ath	contig58582	192	3’	25.52	25.78	1.01
miR446	CAUCAAUAUGAAUAUGUCAGAUGC	24	osa	contig48939	106	5’	36.79	31.13	0.85
miR482	CCUUUCCUAUUCCUCCCAUACC	22	vvi	contig29669	101	3’	46.53	41.7	0.88
miR482a	CCUAUUCCUCCCAUACC	17	ptc	contig29669	101	3’	46.53	41.7	0.88
miR482c	CCUUUCCUAUUCCUCCCAUA	20	ptc	contig29669	97	3’	48.45	40.41	0.83
miR530a	GGCAUCUGCACCUGAACUUU	20	ptc	contig48663	353	5’	42.78	30.31	0.71
miR783	AAGCUUUUUUCUGUCAUGUUC	21	ath	contig18217	346	5’	45.38	32.95	0.73
miR815	GAGGGGAAAGAGGUGAUUGGG	21	osa	contig59498	187	3’	52.94	37.33	0.71
miR816a	GUGACAUACUCUACUUCAGC	20	osa	contig48862	90	5’	36.67	25.6	0.7
miR834b	UUGUAGUAGUGGCGGUGGCAA	21	ath	contig32379	67	3’	52.24	37.61	0.72
miR846	UUGAAUUUUAGCGGUUGAAUU	21	ath	contig33367	129	3’	34.11	27.05	0.79
miR847a	UCAAACUUCUUCUUCUUGAUC	21	ath	contig50301	186	5’	43.01	30	0.7
miR847b	UCAAUCUUCUUCUUCUUCUUG	21	ath	contig46552	202	5’	42.57	29.06	0.68
miR847c	UCUCUUCUCUUCUUCUUUAUA	21	ath	contig00227	166	3’	39.76	29.4	0.74
miR854b	GAGGAGGAGGAGGAGGAGGAG	21	ath	contig45937	119	5’	30.25	24.12	0.8
miR854d	GAUGAGGAGGAGGAGGAGGAU	21	ath	contig33518	280	5’	40.71	29.05	0.71
miR854e	GAAGAGGAGAGAGAUGAGGAG	21	ath	contig26917	169	3’	48.52	32.78	0.68
miR854c	GAUGAGGAUGAGGAUGAGGAU	21	ath	contig34488	261	5’	42.15	29.04	0.69
miR1132h	UAUUAUGGGACGGAGGUAG	19	tae	contig63186	273	3’	30.4	28.54	0.94
miR1134	CAACAAGAAGAAGAAGUAGAAGAU	24	tae	contig12044	144	5’	25.69	31.66	0.85
miR1436c	UUAUCCUGGGACGGAGGGAGU	21	osa	contig61393	264	3’	34.09	34.33	1.01
miR1436d	UUAUUAUGGGACGGAGGUAGU	21	osa	contig63186	275	3’	30.9	80.51	0.94
miR1439a	UAUAGGAAUGGAGGGAGUAUU	21	osa	contig16765	277	3’	29.96	25.13	0.84
miR1439b	UUUAGGAACGGAGGGAGUACU	21	osa	contig56537	267	3’	32.21	28.13	0.87
miR1439c	UUUAGGAAUGGAGGGAGUAAU	21	osa	contig56367	281	3’	28.83	27.94	0.97
miR1439d	UUUGGGAAUGGAGGGAGUAAU	21	osa	contig10661	236	3’	25	22.2	0.89
miR1439e	UUUGGGGAUGGAGAGAGUAUU	21	osa	contig27854	283	3’	29.68	23.92	0.81
miR1439h	UUUAGGAACGGAGGGAGUACU	21	osa	contig56537	267	3’	32.2	75.1	0.87
miR1448	CUUUCCUAUUCCUCCCAUAC	20	ptc	contig29669	99	3’	47.47	40.9	0.87
miR1534a	UAUUUUGUGGAUAUAGUAAU	20	gma	contig49029	70	3’	31.43	26.86	0.85
miR1886c	UGAGAUGAGAUCUGGGUUUGG	21	ath	contig11222	98	3’	42.86	38.47	0.9
miR20975p	AGGGAAGGGAAGGGAAGGGAAG	22	osa	contig15753	69	5’	42.03	43.62	1.04
miR21015p	AUAUUUUUACAAGUAAAAUUGU	22	osa	contig17137	123	5’	38.21	48.62	1.27
miR2108b	UUAAUGUUUUGUCUAAGUGAG	21	gma	contig50952	65	3’	32.31	46.15	1.43
miR2109c	UGCGAGUUUCUGGGGCUCUG	20	gma	contig56006	346	5’	51.45	40.64	0.79
miR2112b	CUUUAUAUAUGCAUUUGUGCU	21	ath	contig55266	270	3’	32.59	23.8	0.73
miR2606a	UACAAUUUCUAAGUUGCUUUG	21	mtr	contig46524	141	5’	37.59	26.88	0.72
miR2607	AUGUGAUUAUGUAAUGAUAGU	21	mtr	contig38869	116	5’	25.86	26.81	1.04
miR2626	AACGUCGUGGUUAAGGGUGUC	21	mtr	contig62419	56	5’	39.29	50.89	1.3
miR2628a	CAUAACUGAAUGAUUAGUAA	20	mtr	contig23672	71	5’	28.17	27.75	0.98
miR2628b	GAUGCAAGGAUGAUGAGUCA	20	mtr	contig11869	189	5’	42.33	31.64	0.75
miR2642	AUGAUUUUCACCAAAUCUUGC	21	mtr	contig07593	77	5’	40.26	30.26	0.75
miR2643b	UUUGGGAUCAGAUAUAAGACA	21	mtr	contig22496	363	5’	36.08	99.8	0.76
miR2658	AUGUGACCUUUUUUAUGUGC	20	mtr	contig28456	74	3’	32.43	31.89	0.98
miR2665	UGCUUUCAUGCCAAGAUUUGA	21	mtr	contig49532	60	5’	33.33	27	0.81
miR2673b	CCGCCUCUUCUUCCUCUUCCGC	22	mtr	contig52872	189	5’	55.03	41.33	0.75
miR2937	AAAAGAGCUUUUGAGGGAGUU	21	ath	contig45835	79	3’	43.04	41.9	0.97

miRNA, microRNA, EST, expressed sequence tag, GC, guanine-cytosine content, MFE, minimal free-folding energy, MFEI, minimal free-folding energy index.