Appendix 11.
Target prediction of identified microRNAs (miRNAs) in Panax ginseng
| miRNA family | Target protein | Target ID |
|---|---|---|
|
| ||
| miR1134 | 1-O-acylglucose:anthocyanin-O-acyltransferase- like protein | Contig60089 |
| miR1134 | NAC domain-containing | Contig56197 |
| miR1134 | Oligopeptide transporter OPT family | Contig23794 |
| miR1134 | PDI-like protein | Contig45218 |
| miR1134 | RESA-like protein with | Contig45096 |
| miR1134 | Ribosome biogenesis protein | Contig45306 |
| miR1134 | RNA recognition motif-containing protein | Contig61121 |
| miR1436c | Cytochrome C oxidase polypeptide | Contig48926 |
| miR1436d | Protein kinase | Contig09014 |
| miR1439a | Chromatin remodeling complex subunit | Contig45689 |
| miR1439a | Enzyme of the cupin superfamily | Contig42038 |
| miR1439a | Proton-dependent oligopeptide transport family protein | Contig30763 |
| miR1439a | Synaptic glycoprotein SC2 | Contig35006 |
| miR1439b | Beta-amyrin synthase | Contig54769 |
| miR1439b | Chromatin remodeling complex subunit | Contig45689 |
| miR1439b | Disease resistance protein | Contig11515 |
| miR1439b | Enzyme of the cupin superfamily | Contig42038 |
| miR1439b | Nitroreductase family protein | Contig53658 |
| miR1439c | Chromatin remodeling complex subunit | Contig45689 |
| miR1439c | Disease resistance protein | Contig11515 |
| miR1439c | Enzyme of the cupin superfamily | Contig42038 |
| miR1439c | Transcription factor jumonji domain-containing protein | Contig45164 |
| miR1439d | Armadillo beta-catenin repeat family protein | Contig45166 |
| miR1439d | Disease resistance protein | Contig11515 |
| miR1439d | Enzyme of the cupin superfamily | Contig42038 |
| miR1439e | Enzyme of the cupin superfamily | Contig42038 |
| miR1439e | Nucleic acid binding | Contig46706 |
| miR1439e | Protein phosphatase | Contig38335 |
| miR1439e | Serine endopeptidase | Contig33916 |
| miR1439e | Squalene monooxygenase | Contig47397 |
| miR1439e | TATA-associated factor II 58 | Contig51124 |
| miR1439e | WRKY transcription | Contig59342 |
| miR1439h | Amino acid | Contig46145 |
| miR1439h | Beta-amyrin synthase | Contig54769 |
| miR1439h | Chromatin remodeling complex subunit | Contig45689 |
| miR1439h | Disease resistance protein | Contig11515 |
| miR1439h | Enzyme of the cupin superfamily | Contig42038 |
| miR1439h | Nitroreductase family protein | Contig53658 |
| miR1448 | CC-NBS-LRR resistance protein | Contig55112 |
| miR1448 | Cinnamyl alcohol dehydrogenase-like protein | Contig48716 |
| miR1448 | Ftsh11 ( protease 11) ATP-dependent peptidase ATPase metallopeptidase | Contig23505 |
| miR1448 | mRNA binding protein precursor | Contig49813 |
| miR1448 | Pentatricopeptide repeat-containing | Contig49516 |
| miR1534a | Acyl- oxidase | Contig09994 |
| miR1534a | Calcium-dependent protein | Contig33156 |
| miR1534a | Chromosome region maintenance protein 1 | Contig48609 |
| miR1534a | Cytochrome c oxidase polypeptide vc | Contig48926 |
| miR1534a | Cytochrome p450 monooxygenase CYP72A59 | Contig11848 |
| miR1534a | Elongation factor 1-alpha | Contig15951 |
| miR1534a | Fat domain-containing protein | Contig49029 |
| miR1534a | Glucan synthase component | Contig49469 |
| miR1534a | Glutathione peroxidase | Contig51675 |
| miR1534a | Lipase class 3 family protein | Contig42396 |
| miR1534a | Lon protease | Contig13984 |
| miR1534a | Multidrug resistance protein | Contig52708 |
| miR1534a | Phosphomethyl pyrimidine kinase thiamin-phosphate pyrophosphorylase | Contig52615 |
| miR1534a | Pre-mRNA splicing factor rna | Contig01168 |
| miR1534a | Pyrophosphate-energized vacuolar membrane proton | Contig03662 |
| miR1534a | R2R3-myb transcription factor myb11 | Contig10498 |
| miR156a | Dead deah box helicase family protein | Contig46517 |
| miR156a | Methionine synthase | Contig23436 |
| miR156a | PPR protein | Contig17870 |
| miR156a | Hypothetical Protein | Contig45577 |
| miR156a | Soluble starch synthase iv-2 | Contig47036 |
| miR156a | Vitamin-b12 independent methionine 5-methyltetrahydropteroyltriglutamate-homocysteine | Contig31422 |
| miR159a | Delta-1-pyrroline-5-carboxylate dehydrogenase | Contig26802 |
| miR159a | Shaker-like potassium channel | Contig56945 |
| miR164 | F-box family protein | Contig35247 |
| miR169h | 26s protease regulatory subunit | Contig24305 |
| miR169h | Heterogeneous nuclear ribonucleoprotein A2 | Contig33032 |
| miR169h | Ketose-bisphosphate aldolase class-ii family protein | Contig15415 |
| miR172f | Calcium-binding allergen OLE | Contig36501 |
| miR172f | Lipase class 3 family protein | Contig52276 |
| miR172f | Type ii peroxiredoxin | Contig57487 |
| miR1886c | Cation chloride cotransporter | Contig50840 |
| miR1886c | CCAAT-binding transcription factor family protein | Contig48908 |
| miR1886c | Ketose-bisphosphate aldolase class-ii family protein | Contig11222 |
| miR1886c | Phospholipase D | Contig53739 |
| miR1886c | Receptor protein kinase clavata1 | Contig30888 |
| miR2097-5p | 2OG-FE oxygenase family protein | Contig20782 |
| miR2097-5p | ABA response element binding factor | Contig36126 |
| miR2097-5p | Cellulose synthase | Contig11555 |
| miR2097-5p | DNA binding | Contig52665 |
| miR2097-5p | Gamma-adaptin 1 | Contig58073 |
| miR2097-5p | Heat shock | Contig15069 |
| miR2097-5p | MCA1 (mid1-complementing activity 1) | Contig45919 |
| miR2097-5p | Nucleolar protein | Contig15060 |
| miR2097-5p | Trehalose-6-phosphate synthase | Contig27435 |
| miR2101-5p | ELP1 (edm2-like protein1) | Contig32343 |
| miR2101-5p | Inositol-tetrakisphosphate 1 | Contig46141 |
| miR2101-5p | Meprin and traf homology domain-containing protein math domain-containing protein | Contig45263 |
| miR2101-5p | Protein binding | Contig48832 |
| miR2101-5p | S-adenosylmethionine-dependent methyltransferase | Contig52110 |
| miR2101-5p | SPL1-related2 protein | Contig17762 |
| miR2108b | Serine threonine protein kinase | Contig48746 |
| miR2108b | With no lysine kinase | Contig45290 |
| miR2109c | Transcription factor, putative | Contig43484 |
| miR2112b | C2 domain-containing protein | Contig44978 |
| miR2112b | Cytochrome | Contig46603 |
| miR2112b | Transcriptional repressor | Contig23975 |
| miR2606a | ARF1-binding protein | Contig31431 |
| miR2606a | ATP binding | Contig51306 |
| miR2606a | Heat shock protein 70 -interacting | Contig35223 |
| miR2607 | Cytosolic phosphoglucomutase | Contig21451 |
| miR2607 | Potassium transporter | Contig10118 |
| miR2626 | Obtusifoliol 14-alpha demethylase | Contig46095 |
| miR2626 | Zinc finger (C3HC4-type ring finger) family protein | Contig50055 |
| miR2628a | Bromodomain protein | Contig30826 |
| miR2628b | mRNA splicing | Contig45688 |
| miR2642 | Cinnamoyl- reductase | Contig49468 |
| miR2642 | Cytochrome c6 | Contig62852 |
| miR2642 | Exocyst complex subunit SEC15-like family protein | Contig51982 |
| miR2642 | Pectinacetylesterase family protein | Contig16753 |
| miR2642 | Photosystem i PSAH protein | Contig57701 |
| miR2642 | Plasma membrane h+-ATPase | Contig19168 |
| miR2642 | Serine-threonine protein plant- | Contig51145 |
| miR2643b | TPR repeat-containing protein | Contig48906 |
| miR2658 | Homeodomain leucine zipper protein | Contig28456 |
| miR2658 | Metalloendopeptidase | Contig51850 |
| miR2658 | Phosphoinositide binding | Contig62161 |
| miR2665 | 3-phosphoserine phosphatase | Contig49532 |
| miR2665 | Ap2 ERF domain-containing transcription factor | Contig56891 |
| miR2665 | Diacylglycerol acyltransferase | Contig48735 |
| miR2665 | Multidrug resistance protein ABC transporter family | Contig17769 |
| miR2673b | 2-cys peroxiredoxin | Contig49523 |
| miR2673b | 6b-interacting protein 1 | Contig37386 |
| miR2673b | CBS domain-containing protein | Contig13027 |
| miR2673b | Della protein | Contig45937 |
| miR2673b | E3 ubiquitin ligase | Contig47870 |
| miR2673b | Glycine-rich protein 2b | Contig38426 |
| miR2673b | Glycine-rich RNA-binding protein | Contig60922 |
| miR2673b | H Aca ribonucleoprotein complex subunit 1-like protein 1 | Contig54326 |
| miR2673b | Inositol phosphate kinase | Contig51804 |
| miR2673b | Kinesin light | Contig45627 |
| miR2673b | Phospholipid cytidylyltransferase | Contig32791 |
| miR2673b | Protein kinase | Contig46112 |
| miR2673b | Ribosomal protein l17-like protein | Contig53111 |
| miR2673b | Hypothetical protein | Contig49580 |
| miR2673b | Tata-binding protein-associated factor 2n-like | Contig33856 |
| miR2673b | WRKY transcription | Contig62618 |
| miR2673b | Zinc finger | Contig37605 |
| miR2937 | Dme DNA n-glycosylase DNA-(apurinic or apyrimidinic site) lyase | Contig45773 |
| miR2937 | Dynamin-related protein expressed | Contig47241 |
| miR2937 | Heat shock protein binding protein | Contig23728 |
| miR2937 | Phospho ribosylformylglycinamidine synthase | Contig56549 |
| miR2937 | Serine-threonine protein plant- | Contig48306 |
| miR319b | Transcription factor WRKY4 | Contig48636 |
| miR319b | L1 specific homeobox gene atml1 ovule-specific homeobox protein a20 | Contig55022 |
| miR319b | Receptor protein kinase clavata1 | Contig30156 |
| miR319e | Transcription factor WRKY4 | Contig48636 |
| miR319e | L1 specific homeobox gene atml1 ovule-specific homeobox protein a20 | Contig55022 |
| miR319e | Receptor protein kinase clavata1 | Contig30156 |
| miR319f | Delta-1-pyrroline-5-carboxylate dehydrogenase | Contig26802 |
| miR319f | Proteasome subunit alpha type 3 | Contig25577 |
| miR319g | Five finger-containing phosphoinositide | Contig51379 |
| miR319g | Phototropic-responsive NPH3 family protein | Contig36246 |
| miR319g | Ubiquitin-protein PUB49 | Contig48309 |
| miR319h | Phototropic-responsive NPH3 family protein | Contig36246 |
| miR319h | Stromal membrane-associated | Contig19616 |
| miR396b | Acyl- oxidase | Contig09994 |
| miR396b | Beta-glucosidase-like protein | Contig07198 |
| miR396b | Heat shock protein | Contig53532 |
| miR396c | ABC transporter family protein | Contig48065 |
| miR396c | AP2 ERF domain-containing transcription factor | Contig24365 |
| miR396c | ELF3 homologue | Contig10723 |
| miR396c | Mitochondrial substrate carrier | Contig46804 |
| miR396c | Splicing factor | Contig58523 |
| miR396c | Type-B response regulator | Contig33927 |
| miR397 | Actin | Contig20734 |
| miR397 | Cell division protein | Contig47714 |
| miR397 | Cytosolic malate dehydrogenase | Contig39102 |
| miR397 | Multidrug resistance-associated protein | Contig23354 |
| miR397 | Synaptic glycoprotein SC2 | Contig35004 |
| miR408a | Chemocyanin precursor | Contig57069 |
| miR414d | 60s ribosomal protein l6 | Contig51433 |
| miR414d | ADP-glucose pyrophosphorylase family protein | Contig52871 |
| miR414d | Ascorbate peroxidase | Contig36806 |
| miR414d | CBL-interacting serine threonine-protein | Contig46717 |
| miR414d | Conserved hypothetical protein | Contig46471 |
| miR414d | Cytochrome p450 | Contig61265 |
| miR414d | Late embryogenesis abundant protein LEA14 | Contig49375 |
| miR414d | NLI interacting factor family protein | Contig12161 |
| miR414d | Pre-mRNA-splicing factor CWC-22 | Contig30561 |
| miR414d | Protein phosphatase | Contig39881 |
| miR414d | Ring finger containing | Contig48197 |
| miR414d | RNA helicase | Contig12914 |
| miR414e | 60s ribosomal protein l6 | Contig51433 |
| miR414e | ADP-glucose pyrophosphorylase family protein | Contig52871 |
| miR414e | Ascorbate peroxidase | Contig36806 |
| miR414e | CBL-interacting serine threonine-protein | Contig46717 |
| miR414e | Conserved hypothetical protein | Contig46471 |
| miR414e | Cytochrome p450 | Contig61265 |
| miR414e | Late embryogenesis abundant protein LEA14 | Contig49375 |
| miR414e | NLI interacting factor family protein | Contig12161 |
| miR414e | Pre-mRNA-splicing factor CWC-22 | Contig30561 |
| miR414e | Protein phosphatase | Contig39881 |
| miR414e | Ring finger containing | Contig48197 |
| miR414e | RNA helicase | Contig12914 |
| miR414f | 60s ribosomal protein l6 | Contig51433 |
| miR414f | ADP-glucose pyrophosphorylase family protein | Contig52871 |
| miR414f | Ascorbate peroxidase | Contig36806 |
| miR414f | CBL-interacting serine threonine-protein | Contig46717 |
| miR414f | Conserved hypothetical protein | Contig46471 |
| miR414f | Cytochrome p450 | Contig61265 |
| miR414f | Late embryogenesis abundant protein LEA14 | Contig49375 |
| miR414f | NLI interacting factor family protein | Contig12161 |
| miR414f | Pre-mRNA-splicing factor CWC-22 | Contig30561 |
| miR414f | Protein phosphatase | Contig39881 |
| miR414f | Ring finger containing | Contig48197 |
| miR414f | RNA helicase | Contig12914 |
| miR414h | 60s ribosomal protein l6 | Contig51433 |
| miR414h | Ascorbate peroxidase | Contig36806 |
| miR414h | CBL-interacting serine threonine-protein | Contig46717 |
| miR414h | Conserved hypothetical protein | Contig46471 |
| miR414h | Cytochrome p450 | Contig61265 |
| miR414h | Heavy-metal-associated domain-containing protein | Contig27681 |
| miR414h | Late embryogenesis abundant protein LEA14 | Contig49311 |
| miR414h | PIN1 | Contig43002 |
| miR414h | Pre-mRNA-splicing factor Cwc-22 | Contig30561 |
| miR414h | Ring finger containing | Contig48197 |
| miR414h | Zinc finger | Contig47019 |
| miR414i | Luminal binding protein | Contig16316 |
| miR414i | Pentatricopeptide repeat-containing protein | Contig48382 |
| miR414i | Zip transporter | Contig21400 |
| miR414j | Cytochrome p450 reductase | Contig45338 |
| miR414j | Heat shock factor | Contig50711 |
| miR414j | Heavy-metal-associated domain-containing protein | Contig27681 |
| miR414j | Kinase family protein | Contig24024 |
| miR414j | Lectin protein kinase family protein | Contig21894 |
| miR414j | MYB transcription factor | Contig16861 |
| miR414j | Phosphatidylinositol-4-phosphate 5-kinase family protein | Contig50328 |
| miR414j | Small RAS-like GTP-binding protein | Contig07528 |
| miR414j | Tryptophanyl-tRNA synthetase | Contig34813 |
| miR414j | Vacuolar morphogenesis protein | Contig08171 |
| miR414l | Copalyl diphosphate synthase | Contig52365 |
| miR414l | DNA binding | Contig36892 |
| miR414l | Heat shock factor protein HSF30 | Contig23567 |
| miR414l | Insulinase containing expressed | Contig30114 |
| miR414l | Leucine-rich repeat-containing | Contig54865 |
| miR414l | Pescadillo-like protein | Contig30996 |
| miR414l | RNA polymerase ii transcription elongation factor SPT5 | Contig31454 |
| miR414l | Ubiquitin-protein ligase 1 | Contig17692 |
| miR417 | Binding protein | Contig37222 |
| miR417 | Nucleic acid binding | Contig33218 |
| miR419e | Argonaute family member | Contig09488 |
| miR419e | Auxin response factor 4 | Contig30161 |
| miR419e | Beta-glactosidase 8 | Contig50325 |
| miR419e | Bromodomain protein | Contig45057 |
| miR419e | Bzip transcription factor | Contig52353 |
| miR419e | Dna binding protein | Contig49741 |
| miR419e | Heavy-metal-associated domain-containing protein | Contig61082 |
| miR419e | Nucleosome assembly | Contig33375 |
| miR419e | Polyphenol oxidase | Contig27778 |
| miR419e | SIT4 phosphatase-associated family protein | Contig27966 |
| miR446 | Beta-galactosidase like protein | Contig45051 |
| miR482 | Alpha-glucosidase | Contig47628 |
| miR530a | COP1-interacting protein 7 | Contig30564 |
| miR530a | ISP4-like protein | Contig45556 |
| miR530a | Zinc finger protein | Contig27700 |
| miR783 | Pentatricopeptide repeat-containing | Contig55799 |
| miR783 | Short-chain dehydrogenase reductase family protein | Contig52837 |
| miR783 | Vacuolar protein sorting-associated | Contig50413 |
| miR815 | Adenylate kinase | Contig34836 |
| miR815 | Chromatin remodeling complex subunit | Contig04324 |
| miR815 | Cullin-like 1 protein | Contig30323 |
| miR815 | Dead-box protein | Contig31488 |
| miR815 | Fat domain-containing protein | Contig29906 |
| miR815 | Glutamyl-tRNA amidotransferase subunit A | Contig34203 |
| miR815 | Lysosomal alpha-glucosidase | Contig49082 |
| miR815 | RPH1 (resistance to phytophthora 1) | Contig38523 |
| miR834b | Histone H3 | Contig50215 |
| miR834b | Receptor-like serine threonine protein kinase ARK3 | Contig45114 |
| miR834b | Set domain protein | Contig46763 |
| miR846 | Glucan endo beta-glucosidase | Contig42642 |
| miR846 | Kip-related cyclin-dependent kinase inhibitor 7 | Contig47511 |
| miR846 | Multidrug resistance protein | Contig49696 |
| miR846 | RNA-binding protein CP31 | Contig49296 |
| miR847a | Bile acid: sodium symporter family protein | Contig58467 |
| miR847a | Heat shock protein | Contig01966 |
| miR847a | Viral A-type inclusion protein | Contig47741 |
| miR847a | Zinc finger | Contig51073 |
| miR847b | Amino acid binding | Contig46296 |
| miR847b | Amino acid permease | Contig18864 |
| miR847b | Binding protein | Contig30978 |
| miR847b | Chlorophyll a, b-binding protein | Contig50308 |
| miR847b | Geranylgeranyl pyrophosphate synthase-related protein | Contig49005 |
| miR847b | Inositol -trisphosphate 5 6 kinase | Contig46827 |
| miR847b | Serine threonine protein kinase | Contig34614 |
| miR847b | TPR domain containing protein | Contig45092 |
| miR847b | Vitamin-B12 independent methionine 5-methyltetrahydropteroyltriglutamate-homocysteine | Contig23525 |
| miR847c | 2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase | Contig28077 |
| miR847c | Amidohydrolase domain-containing protein | Contig56377 |
| miR847c | Cytosolic phosphoglycerate kinase 1 | Contig13961 |
| miR847c | DNA repair protein RAD4 family | Contig36417 |
| miR847c | Eukaryotic translation initiation factor 4g | Contig17702 |
| miR847c | PSI type iii chlorophyll a b-binding protein | Contig52383 |
| miR847c | Small nuclear ribonucleoprotein E | Contig56509 |
| miR847c | Vacuolar ATP synthase subunit | Contig47586 |
| miR847c | Vq motif-containing protein | Contig35306 |
| miR847c | Zinc finger | Contig48641 |
| miR854b | CRR3 (chlororespiratory reduction 3) | Contig53843 |
| miR854b | Ethylene responsive element binding factor | Contig49258 |
| miR854b | MYB-related transcription factor LBM2-like | Contig59010 |
| miR854b | Squalene epoxidase | Contig52768 |
| miR854b | Starch branching enzyme ii | Contig30265 |
| miR854b | Transcription initiation factor iib | Contig34296 |
| miR854b | UDP-n-acetylglucosamine: dolichol phosphate n-acetylglucosamine-1-p transferase | Contig32764 |
| miR854c | Transcription factor WRKY4 | Contig56799 |
| miR854c | CRR3 (chlororespiratory reduction 3) | Contig53843 |
| miR854c | DNA binding | Contig35557 |
| miR854c | Ethylene responsive element binding factor | Contig49258 |
| miR854c | F-box family protein | Contig47190 |
| miR854c | Gamma response i protein | Contig21322 |
| miR854c | Hypothetical protein | Contig56684 |
| miR854c | Phototropic-responsive NPH3 family protein | Contig46596 |
| miR854c | Plastid division protein | Contig45829 |
| miR854c | Polynucleotide phosphorylase | Contig32431 |
| miR854c | Protein binding protein | Contig34488 |
| miR854c | RNA helicase | Contig12919 |
| miR854c | SAS10 U3 ribonucleoprotein family protein | Contig27731 |
| miR854c | Squalene epoxidase | Contig52768 |
| miR854c | Starch branching enzyme ii | Contig30265 |
| miR854c | Transcription initiation factor iib | Contig34296 |
| miR854c | Type i phosphodiesterase nucleotide pyrophosphatase family protein | Contig46494 |
| miR854c | U4 u6 small nuclear ribonucleoprotein PRP3 | Contig26841 |
| miR854c | Ubiquitin-conjugating enzyme e2 I | Contig14762 |
| miR854d | Transcription factor WRKY4 | Contig56799 |
| miR854d | Aminoacyl-tRNA synthetase family | Contig15841 |
| miR854d | C-4 sterol methyl oxidase | Contig48724 |
| miR854d | Chalcone isomerase | Contig52143 |
| miR854d | Galactosyltransferase family protein | Contig04535 |
| miR854d | Heat shock protein 90 | Contig06778 |
| miR854d | PDV2 (plastid division2) | Contig53900 |
| miR854d | Serine threonine protein kinase | Contig21634 |
| miR854e | Cell division protein | Contig11097 |
| miR854e | Farnesyl diphosphate synthase | Contig50044 |
| miR854e | Glutathione reductase | Contig12638 |
| miR854e | Inositol-tetrakisphosphate 1 | Contig33622 |
| miR854e | Multicatalytic endopeptidase proteasome beta subunit | Contig48772 |
| miR854e | Pbf68 protein | Contig53517 |
| miR854e | Phospholipase D | Contig51301 |
| miR854e | Pre-mRNA splicing factor PRP38 | Contig48032 |
| miR854e | TCP family transcription | Contig47975 |
| miR854e | Type i phosphodiesterase nucleotide pyrophosphatase family protein | Contig46494 |