Table 5.
Occurrence of “TTCCA” repeats and its derivatives with single or multiple base alterations per 3564 array of DYZ1 in DU145 and LNCaP with the reference sequence AC068123.5
| Serial No. | Repeat unit and derivatives |
Number of TTCCA repeat units and its derivatives per 3564 bp Hae III unit of DYZ1 array |
||
|---|---|---|---|---|
| AC068123.5 | DU145 | LNCaP | ||
| 1 |
Actual Size (bp) |
3564 |
3564 |
3465 |
| 2 |
TTCCA |
229 |
235 |
228 |
| 3 |
1 bp derivatives |
292 |
289 |
282 |
| 4 |
ATCCA |
11 |
9 |
9 |
| 5 |
TACCA |
3 |
3 |
2 |
| 6 |
TTACA |
14 |
13 |
15 |
| 7 |
TTCAA |
21 |
22 |
22 |
| 8 |
TTTCA |
19 |
19 |
19 |
| 9 |
TTCTA |
25 |
25 |
25 |
| 10 |
TTCCT |
32 |
33 |
33 |
| 11 |
GTCCA |
27 |
31 |
28 |
| 12 |
TGCCA |
9 |
10 |
10 |
| 13 |
TTGCA |
25 |
22 |
22 |
| 14 |
TTCGA |
60 |
60 |
57 |
| 15 |
TTCCG |
18 |
17 |
16 |
| 16 |
CTCCA |
14 |
14 |
14 |
| 17 |
TCCCA |
6 |
4 |
4 |
| 18 |
TTCCC |
8 |
7 |
6 |
| 19 |
2 bp derivatives |
142 |
142 |
139 |
| 20 |
3 bp derivatives |
37 |
33 |
30 |
| 21 |
4 bp derivatives |
9 |
9 |
10 |
| 22 | 5 bp derivatives | 1 | 1 | 1 |