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. 2013 May 21;8(5):e63919. doi: 10.1371/journal.pone.0063919

Table 2. Details of primers and the PCR conditions.

Gene Primers Sequence (5'-3') Amplicon(bp) Annealing temperature Restrictionsites Position of primers on the Y.e. strain 8081 complete genome
sodA SodA 624F TTTGGATCCATGAGTTACTCACTGCCATCCCT 624 58°C –40s BamHI and SacI 4530100–4530122
SodA 624R TTTGAGCTCCTTAGCTTGAGCGAAGCGC 4530720–4530702
sodB SodB 579F TTTGAGCTCATGTCTTTTGAATTACCGGCGTT 579 59°C –40s SacI and NotI 2356988–2357007
SodB 579R TTTGCGGCCGCCCGGCTAAGTTTTTCTCAACGAA 2357563–2357543
sodC SodC 525F AAAGCGGCCGCATGAAACTGAAATACTTAGTGTTACCC 525 50°C –40s NotI and XhoI 877988–878014
SodC 525R AAACTCGAGTTACTCAATCACACCACAAGC 878514–878492
sodC SodC Trun F AAAGCGGCCGCATGGCTGCGGATATTACTGTGAC 476 50°C –40s NotI and XhoI NA
SodC 524R AAACTCGAGTTACTCAATCACACCACAAGC 878514–878492

Nucleotide bases in bold represent restriction sites. NA: the primer was designed using the sequence of sodC (accession no. JX204785) from strain IP27366 as the template.