Table 2. Details of primers and the PCR conditions.
Gene | Primers | Sequence (5'-3') | Amplicon(bp) | Annealing temperature | Restrictionsites | Position of primers on the Y.e. strain 8081 complete genome |
sodA | SodA 624F | TTTGGATCCATGAGTTACTCACTGCCATCCCT | 624 | 58°C –40s | BamHI and SacI | 4530100–4530122 |
SodA 624R | TTTGAGCTCCTTAGCTTGAGCGAAGCGC | 4530720–4530702 | ||||
sodB | SodB 579F | TTTGAGCTCATGTCTTTTGAATTACCGGCGTT | 579 | 59°C –40s | SacI and NotI | 2356988–2357007 |
SodB 579R | TTTGCGGCCGCCCGGCTAAGTTTTTCTCAACGAA | 2357563–2357543 | ||||
sodC | SodC 525F | AAAGCGGCCGCATGAAACTGAAATACTTAGTGTTACCC | 525 | 50°C –40s | NotI and XhoI | 877988–878014 |
SodC 525R | AAACTCGAGTTACTCAATCACACCACAAGC | 878514–878492 | ||||
sodC | SodC Trun F | AAAGCGGCCGCATGGCTGCGGATATTACTGTGAC | 476 | 50°C –40s | NotI and XhoI | NA |
SodC 524R | AAACTCGAGTTACTCAATCACACCACAAGC | 878514–878492 |
Nucleotide bases in bold represent restriction sites. NA: the primer was designed using the sequence of sodC (accession no. JX204785) from strain IP27366 as the template.