Table 1. Summary of BAC-anchored microsatellite and SNP markers used for map integration.
| Marker Source | Number of markers | Physical length (Mb) (Number of contigs or BACs) |
| Pre-developed BAC-anchored microsatellite markers | 244 | 144.06 (169 contigs and 46 BACs) |
| Contig-anchored | 198 | 137.55 (169 contigs) |
| Single BAC-anchored | 46 | 6.50 (46 BACs) |
| Newly developed contig-anchored microsatellite markers | 206 | 258.28 (166 contigs) |
| Number of microsatellite loci tested | 629 | |
| Monomorphic in mapping panel | 324 | |
| Amplification failed | 79 | |
| Duplicated | 10 | |
| Informative for linkage analysis | 226 | |
| Mapped to linkage groups | 206 | |
| SNP markers associated with BES | 130 | 69.55 |
| Contig-anchored | 92 | 64.23 (92 contigs) |
| Single BAC-anchored | 38 | 5.32 (38 BACs) |
| Other microsatellite markers associated with BES | 40 | 26.86 |
| Contig-anchored | 36 | 26.30 (36 contigs) |
| Single BAC-anchored | 4 | 0.56 (4 BACs) |
| Total | 620 | 1498.75 (463 non-redundant contigs and 88 BACs) |
1
Note: The sum-length of all integrated contigs and BACs after removing redundancy.