Table 3.
Average local ancestry deviation (in normalized standard deviation units) at loci with increased MILANC rate
| Method | Number of loci with increased MILANC rate 5%/7.5% | Deviation in local ancestry |
||
|---|---|---|---|---|
| EUR | NAM | AFR | ||
| GALA Mexican | ||||
| WINPOP | 164/17 | −0.3/−1.6 | −0.1/0.0 | 0.7/2.9 |
| LAMP-LD | 294/28 | 0.8/1.3 | −0.9/−1.4 | 0.2/0.1 |
| ALLOY | 197/16 | 1.1/0.5 | −1.5/−2.0 | 1.0/4.1 |
| GALA Puerto Rican | ||||
| WINPOP | 252/21 | −0.1/−0.7 | 0.2/0.5 | 0.0/0.4 |
| LAMP-LD | 78/0 | 0.5/ | −0.8/ | 0.1/ |
| ALLOY | 712/53 | −0.0/−0.8 | −0.1/0.4 | 0.1/0.6 |
Note: We display results for two nominal levels of MILANC rate 5%, 7.5%. We did not display results for PCAdmix, as the mean MILANC rate of PCAdmix exceeds the nominal levels we considered.