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. 2013 May 22;8(5):e64234. doi: 10.1371/journal.pone.0064234

Table 1. Primer for the isotype-specific amplification of the complete variable regions.

Forward primer Reverse primer Primersequence 5′-3′ Approximated product size in bp
BoLH_BACK ACCCACTGTGGACCCTCCTC
BoIgMCH2_FOR TGCCGTCACCAGAGAGGCTGT 795
BoIgDCH2_FOR TGCGTGCTGACCGCCTTGTT 805
BoIgG1-3CH1_FOR GGCACCCGAGTTCCAGGTCA 536
BoIgECH1_FOR GCCCAGCCTTACACGGGCTT 467
BoIgACH1_FOR GCCAGCACGGCAGGGAAGTT 574
GAPDH_for TGGTCACCAGGGCTGCT
GAPDH_rev GGAGGGGCCATCCACAGTCT 527

One universal forward primer was used for annealing within the leader region. For each isotype, a reverse primer was generated for specific amplification. The annealing sites were selected in the first constant region (IGCH1), with the exception of IgM and IgD. Both isotypes share high homologies in the IGCH1 and therefore, specific reverse primers were generated for binding in the second constant region. The IgG subtypes were not distinguished further. Primers for bovine GAPDH served as cDNA quality control.