Table 1. Top 50 candidate LESC markers ^a .

Ensemble ID	Gene Symbol	Description	FDR p-value	RPKM
ENSG00000143153	ATP1B1	ATPase, Na+/K+ transporting, beta 1 polypeptide	0.000449	10.25
ENSG00000158747	NBL1	neuroblastoma, suppression of tumorigenicity 1	2.75E-12	5.25
ENSG00000144057	ST6GAL2	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	0	3.33
ENSG00000111850	C6orf162	chromosome 6 open reading frame 162	0.000013	2.26
ENSG00000135960	EDAR	ectodysplasin A receptor	6.68E-14	2.21
ENSG00000113396	SLC27A6	solute carrier family 27 (fatty acid transporter), member 6	0	2.12
ENSG00000101191	DIDO1	death inducer-obliterator 1	0.03	2.07
ENSG00000256673	RP11-599J14.2	Known pseudogene	0.000415	1.94
ENSG00000183495	EP400	E1A binding protein p400	2.37E-09	1.66
ENSG00000263050	RP11-667K14.3	Novel lincRNA	0.000264	1.6
ENSG00000249742	RP11-217E13.1	Putative lincRNA	0.000264	1.49
ENSG00000143228	NUF2	NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	0.00000145	1.44
ENSG00000163067	ZNF2	zinc finger protein 2	4.14E-08	1.42
ENSG00000129810	SGOL1	shugoshin-like 1 (S. pombe)	0.00959	1.23
ENSG00000114790	ARHGEF26	Rho guanine nucleotide exchange factor (GEF) 26	0.000041	1.16
ENSG00000185760	KCNQ5	potassium voltage-gated channel, KQT-like subfamily, member 5	6.91E-12	1.15
ENSG00000259483	RP11-930O11.2	Novel processed transcript	0.02	1.03
ENSG00000254754	RP11-20J1.1	Putative lincRNA	0.03	0.91
ENSG00000093009	CDC45	cell division cycle 45 homolog (S. cerevisiae)	0.000084	0.89
ENSG00000169372	CRADD	CASP2 and RIPK1 domain containing adaptor with death domain	0.0021	0.85
ENSG00000260128	ULK4P2	unc-51-like kinase 4 (C. elegans) pseudogene 2	6.69E-08	0.84
ENSG00000158301	GPRASP2	G protein-coupled receptor associated sorting protein 2	0.02	0.82
ENSG00000171126	KCNG3	potassium voltage-gated channel, subfamily G, member 3	6.12E-12	0.81
ENSG00000254744	CTD-3076O17.1	Novel antisense	0.00553	0.8
ENSG00000250673	RP11-6L6.2	Putative protein coding	0.03	0.8
ENSG00000196526	AFAP1	actin filament associated protein 1	3.01E-08	0.79
ENSG00000151617	EDNRA	endothelin receptor type A	0.000825	0.76
ENSG00000125257	ABCC4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	2.68E-09	0.72
ENSG00000130669	PAK4	p21 protein (Cdc42/Rac)-activated kinase 4	0.00222	0.72
ENSG00000177098	SCN4B	sodium channel, voltage-gated, type IV, beta subunit	0.0000106	0.72
ENSG00000106665	CLIP2	CAP-GLY domain containing linker protein 2	0.02	0.71
ENSG00000112530	PACRG	PARK2 co-regulated	0.04	0.7
ENSG00000174827	PDZK1	PDZ domain containing 1	0.0000244	0.69
ENSG00000140093	SERPINA10	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	0.00125	0.69
ENSG00000123473	STIL	SCL/TAL1 interrupting locus	0.000000555	0.69
ENSG00000102858	MGRN1	mahogunin ring finger 1, E3 ubiquitin protein ligase	0.00111	0.67
ENSG00000186715	MST1P9	macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 9	0.000000182	0.61
ENSG00000261777	RP11-529K1.2	Novel processed transcript	0.0000735	0.61
ENSG00000134253	TRIM45	tripartite motif containing 45	0.03	0.61
ENSG00000203872	C6orf163	chromosome 6 open reading frame 163	0.0092	0.59
ENSG00000255263	RP11-718B12.3	Putative antisense	0.00359	0.57
ENSG00000225377	RP5-1103G7.4	Novel antisense	0.01	0.57
ENSG00000215760	TAF9BP2	TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31 kDa pseudogene 2	0.05	0.57
ENSG00000158813	EDA	ectodysplasin A	0.00105	0.56
ENSG00000248125	CTB-73N10.1	Novel lincRNA	0.000974	0.55
ENSG00000236215	RP11-262H14.10	Known pseudogene	0.05	0.55
ENSG00000235167	RP11-425M5.5	Putative processed transcript	0.00854	0.54
ENSG00000095627	TDRD1	tudor domain containing 1	4.03E-11	0.54
ENSG00000125319	C17orf53	chromosome 17 open reading frame 53	0.02	0.52
ENSG00000253983	RP1-16A9.1	Novel antisense	0.02	0.51

^aGenes with uniquely identified transcript in BLCs, q-value <0.05, and higher RPKM values than SLCs.